Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0238 ATGGACCTTCGCAAGCGTGGAAGGCCCGAACTCGCCTTCAGCCTTAACGGCGCCGTTAAGAAGACCAAGCAAGACTTGGAGTCCTTATCAGGTGGTGTAGGAAGCAAATCGAAGCCCTGTACCAAGTTTTTTAGCACTGCTGGCTGCCCATTTGGTGAGGGCTGCCATTTCTTGCATTATGTTCCTGGTGGTTATAATGTGGTTGCCCATATGATGAATTTAAAACCTGCTGCTCCTCCTTCAAGAGCTGTTACTGCACCACTTCCGGTATCTAATGGCTCTACTCCATCTGCTGTTAAAACACGCATATGTAACAAGTTCAATACTGCCGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCTCATGGTGAATGGGAACTTGGTAAACCTATTGCTCCCTCAATTGATGATCATCGACCTTTGGGACCTCCATCAGCTGGTCGGATGGCTGGTCGAATTGAGCCTCCTCCCTTGGCTGGGAGCTTTGGTGCCATTTCTACTGCCAAGATCAGTGTAGAAGCTTCTCTGGCAGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCGAAACTTTCAATCCGAGAGCATGAAACTGATCCAAACCTTAGAAACATTGAACTTGAGGGAACATTCGAACAGATAAAGGAGGCAAGTAATATGGTAAAAGATTTACTTTTGACTGTTTCAATGTCTGCCCCTCCCAAATCCACCCCTGGTGTTCCTGGTGCCCCTGCTCCACCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGGTCTTGCACCTTTGGAGATCGATGCCACTTTGCTCATGGAGCTGCTGAGTTGCGCAAGCAGGGGGTATGA 882 0.4807 MDLRKRGRPELAFSLNGAVKKTKQDLESLSGGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNVVAHMMNLKPAAPPSRAVTAPLPVSNGSTPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPLGPPSAGRMAGRIEPPPLAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGDRCHFAHGAAELRKQGV* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0238 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Vra8g0238 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Vra8g0238 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Vra8g0238 293 Gene3D - 258 291 - -
Vra8g0238 293 Gene3D - 91 130 - -
Vra8g0238 293 CDD KH-I 168 231 - -
Vra8g0238 293 Gene3D K Homology domain, type 1 164 257 IPR036612 GO:0003723
Vra8g0238 293 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Vra8g0238 293 SUPERFAMILY CCCH zinc finger 96 129 IPR036855 GO:0046872
Vra8g0238 293 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
Vra8g0238 293 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vra8g0238 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 155 236 IPR036612 GO:0003723
Vra8g0238 293 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vra8g0238 293 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 292 - -
Vra8g0238 293 Pfam KH domain 169 231 IPR004088 GO:0003723
Vra8g0238 293 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Vra8g0238 293 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Vra8g0238 293 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Vra8g0238 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Vra8g0238 293 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 292 - -
Vra8g0238 293 SUPERFAMILY CCCH zinc finger 259 289 IPR036855 GO:0046872
Vra8g0238 293 SMART kh_6 165 235 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0238 Vra-Chr8 2925506 2929992 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra8g0238 KH_1 8.8e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0238 - - gmx:100817463 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0238 8 2925506 2929992 Vra8g0238 8 2925506 2929992 ECH
Vra3g0021 3 216471 221873 Vra8g0238 8 2925506 2929992 PCT