Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0229 ATGCAAATCCCATGGATAGTCAATTATCAATATGCAGCAACACTTTTCTTCGTTACCATTGCTCTTACCAAAGTTACCTGTCTTAAGTTCAACTTCCCTTCCTTCCCAGATGATTCTAATCTATGGGTGAGCAAGAATTCAAGTATATTCCTAGATGCCATCCAAGTGTCACCTGATATTCGTGGTCCCATAGATCATTATTCTGGACGTGTTTTCTACATAGACCCATACCTGCTTTGGAAAGAGAAGAATAACCGAAACCAAATAGCTTCCTTCAACACCACTTTTGTGCTCAACATAACTCCGGAAACTACCCCTGGTGGTGAAGGCTTGGCCTTTATCTTAACTTCAGATAGGACTGTCCCAGAAAGCAGTGATGGACAATGGCTTGGTATTGTAAATGCTACTTCCAATGGAACTTCACAGCCTGGTATTCTAGCAGTTGAATTTGACACAAGACACAGTTTCACTGAAGATGGCCCCGACAATCACGTTGGCATCAATATAAACAGCATCAACTCCATCCAACAGGTTTCGTTAATAAACTCTCGGCTCAATCTATCTTCAGGTCAAGATGTCAAAATTCACATTCAGTACATCAATGACACAATATCAGTTTTTGGTGCCATGAGTGGAACTTCTGAAGAATCCATGGAGACCCTCTTGGTGTCTGAGCCTCTTAATTTATCTTCCTTTCTTCAAAAAGAGGTTTACATTGGCTTCTCCGCCTCAACAAGTAACTACACGCAGCGGAACTGTGTAAGATCGTGGGAATTCAGCGGGGATGATATTAGAGATGATGACAACAGTCTCTTGTGGGTTTATGTTGCCGTTCCAATCGTGATTGTTTTAATTATCATTGGTGGGTTGGTGATCTTTTTCTTGCGCTGGCAAAAGATTCGCCATATGGAGGGGCCAGAAGATGCATATCCAAGGATAGAGGACCAGATTAAATATTCCTCTATGGCTCCGAAGAAGTTTAGGCTAAGGGAACTAACGAAAGCAACTGGTGGATTCAGCCTTCAAAACAAGCTAGGACAAGGTGGGTTTGGAACTGTGTATAAGGGACTACTGGAAAATAAGGAGGTAGCTGTAAAGAGAGTTTCCAAGAACTCACGCCAAGGGAAGCAAGAGTTTGTGGCAGAAGTGACAACAATCGGAAGCCTTCACCATAGAAATTTGGTGAAACTCACTGGTTGGTGCTATGAGAATAGAGAGCTTCTCCTTGTGTACGAGTTCATGCCTAATGGAAGCCTAGACAAGTACCTCTTTNGTGACAAAGNTTGTGGTNATAATTATGACTTTGAAGGAGGGTATNCTATAACGTTGGACTGGGAAACTAGGNNAAGAGTGATTCATGGGGTNGCTCAAGCACTTGACTACCTTCACGATGGNTGNGAGAGGAGNGTTCTCCACAGAGANATCAAGGCCAGCAACATAATGCTNGACTCAGATTACAATGCCAAGCTGGGAGANTTTGGATTGGCTAGAACAATTCAGAAGAGAAATGAAACGCATCACTCTACAAAAGAGATTGCAGGCACACCCGGGTACATGGCCCCAGAAACCTTCCTGACTGGGAGGGCAACGGTGGAGACAGATGTGTATGCATTTGGGGTTCTTGTGTTGGAAGTAGTGTGTGGAAAGAGGCCAGGGAATGTGTATTCACAGGATGACTACAAGAACAGCATTGTGTATTGGGTATGGGATTTGTATGGGAAGGGAAAAGTAGTTGGTGCTGTTGATGGAAGGTTGAAGAAGGAGGAGATTATTGAGGAAGAAGTGGACTGCGTTCTTGTTCTTGGCTTGGCTTGTTGCCATCCAAATCCACACAAAAGACCATCGATGAGAACAGTTCTTCAGGTTCTGAATGGGGAAGCAGCTCCACCTGAAGTGCCTAAGGAAAGACCAGTTTTTATGTGGCCTGCTATGCCTCCATCTTTCAAAGAAGCTGAAGATAGCTCGCTCATCCAGGGAACTCTCACTCCTTTCACTGAGATCACTGGAAGATGA 2013 0.4357 MQIPWIVNYQYAATLFFVTIALTKVTCLKFNFPSFPDDSNLWVSKNSSIFLDAIQVSPDIRGPIDHYSGRVFYIDPYLLWKEKNNRNQIASFNTTFVLNITPETTPGGEGLAFILTSDRTVPESSDGQWLGIVNATSNGTSQPGILAVEFDTRHSFTEDGPDNHVGININSINSIQQVSLINSRLNLSSGQDVKIHIQYINDTISVFGAMSGTSEESMETLLVSEPLNLSSFLQKEVYIGFSASTSNYTQRNCVRSWEFSGDDIRDDDNSLLWVYVAVPIVIVLIIIGGLVIFFLRWQKIRHMEGPEDAYPRIEDQIKYSSMAPKKFRLRELTKATGGFSLQNKLGQGGFGTVYKGLLENKEVAVKRVSKNSRQGKQEFVAEVTTIGSLHHRNLVKLTGWCYENRELLLVYEFMPNGSLDKYLFXDKXCGXNYDFEGGYXITLDWETRXRVIHGVAQALDYLHDGXERXVLHRXIKASNIMLDSDYNAKLGXFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPGNVYSQDDYKNSIVYWVWDLYGKGKVVGAVDGRLKKEEIIEEEVDCVLVLGLACCHPNPHKRPSMRTVLQVLNGEAAPPEVPKERPVFMWPAMPPSFKEAEDSSLIQGTLTPFTEITGR* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0229 670 PANTHER - 15 658 - -
Vra8g0229 670 ProSitePatterns Protein kinases ATP-binding region signature. 345 366 IPR017441 GO:0005524
Vra8g0229 670 ProSiteProfiles Protein kinase domain profile. 339 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0229 670 CDD STKc_IRAK 345 625 - -
Vra8g0229 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 269 IPR013320 -
Vra8g0229 670 SUPERFAMILY Protein kinase-like (PK-like) 320 623 IPR011009 -
Vra8g0229 670 Gene3D Transferase(Phosphotransferase) domain 1 414 643 - -
Vra8g0229 670 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 15 658 - -
Vra8g0229 670 CDD lectin_legume_LecRK_Arcelin_ConA 28 260 IPR001220 GO:0030246
Vra8g0229 670 Gene3D Phosphorylase Kinase; domain 1 324 413 - -
Vra8g0229 670 Pfam Protein tyrosine and serine/threonine kinase 340 622 IPR001245 GO:0004672|GO:0006468
Vra8g0229 670 Pfam Legume lectin domain 28 268 IPR001220 GO:0030246
Vra8g0229 670 Gene3D - 26 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0229 Vra-Chr8 2821141 2823367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0229 62 641 Receptor kinase-like Gene Family AT5G55830 37.220 3.82e-118 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra8g0229 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0229 - - pvu:PHAVU_007G260300g 1127.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0229 8 2821141 2823367 Vra8g0229 8 2821141 2823367 ECH