Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0228 ATGATTTATATAAACAAAGGAATGATGCATCATAAACATTTAAAACTCAGAATAGGCCTTCAAAAATCAAGCCACTCTTTGCCATTTCAAAACGGAAATATGCAGATCCCTTGGATAGTCAAATATCACTATGCAGCTACGCTCTTCTTCGTTACCGTTGCTCTTACCAAAGTTACCTGTTTTCAGTTCAACTTCCCTTCCTTCCCAGATGACTCTAATCTATTGCTGCTCGGGAGTTCAAGAATATTCTTAGATGCCATCCAAGTAACCCTTGATAGTCGTGGTACTATAGAGAATTATTCTGGACGTGCTCTCTACAGAAAGCCATACCAACTTTGGAACCAAAATCAAATAGCTTCCTTCAACACCACTTTTGTGCTCCGAATCACTCCGGAAACTACTCCTGGTGGTGAAGGCTTGGCCTTTATCTTAACTTCAGATAGGACTGTCCCAGAAAACAGTGATGGACAATGGATTGGTATTGTAAATGCTACTTCCAATGGAACTTCACAGCCTGGTATTCTAGCAGTGGAATTTGACACAAGACACAATTTCAAAGAAGATGGCCCTGACAATCACGTTGGCATCAACATAAACAGCATCAACTCCATTCAACAGGTTTCGTTAATAAATACTCGGCTCAGTCTATCTTCAGGCCAAGATGTCAAATTTCACATTCAGTACATCAATGACACAATATCAGTTTTTTGTGCCATGAGTGGAACTTCTGAAGAATCTATGGAGACCCTATTGGTATCTCCACCTCTTAATTTGTCTTCCTTTCTTCAAAAGGAGGTTTACATTGGCTTCTCCGCCTCAACAAGTAACTACACGGAGAGGAACTGTGTCAGATCGTGGGAATTCAGCGGGGATGATATTAGGGATGATGACAAAAGTCTCTTGTGGGTTTATGTTGCCGTTCCAATCGTGATTGTTTCAATTATCATTGGTGGGTTGGCGATCTTTTTCTTGCGCTGGCAAAAGACTCGCCATATGGAGGGGCCAGAAGATGCATATCCAAGGATAGAGGATCAGATTAAATATTCCTCTATGGCTCCGAAGAAGTTTAGGCTAAGGGAACTAACGAAGGCAACTGGTGGATTCAGCCTTCAAAACAAGCTTGGACAAGGCGGGTTTGGAACTGTGTATAAGGGGCTACTGGAAAATAAGGAGGTAGCTGTAAAGAGAGTTTCCAAGAACTCACGCCAAGGGAAGCAAGAGTTTTTGGCAGAAGTGACAACAATCGGAAGCCTTCACCATAGAAATTTGGTGAAACTCACTGGTTGGTGCTATGAGAATAGAGAGCTTCTCCTTGTGTACGAGTTCATGCCTAATGGAAGCCTAGACAAGTACCTCTTTNGTGACAAAGNTTGTGGTNATAATTATGACTTTGAAGGAGGGTATNCTATAACGTTGGACTGGGAAACTAGGNNAAGAGTGATTCATGGGGTNGCTCAAGCACTTGACTACCTTCACGATGGNTGNGAGAGGAGNGTTCTCCACAGAGANATCAAGGCCAGCAACATAATGCTNGACTCAGATTACAATGCCAAGCTGGGAGANTTTGGATTGGCTAGAACAATTCAGAAGAGAAATGAAACGCATCACTCTACAAAAGAGATTGCAGGCACACCCGGGTACATGGCCCCAGAAACCTTCCTGACTGGGAGGGCAACGGTGGAGACAGATGTGTATGCATTTGGGGTTCTTGTGTTGGAAGTAGTGTGTGGAAAGAGGCCATGGAATGTGTATGCACAAGATGACTACGAGAACAGCATTGTGTATCGGGTATGGGATTTGTATGGGAAGGGAAAAGTAGTTGGTGCTGTTGATGGAAGGTTGAAGAAGGAGGAGATTATGGAGGAAGAAGTGGACTGCGTTCTTGTTCTTGGCTTGGCTTGTTGCCATCCAAATCCACACAAAAGACTATCCATGAGAACAGTTCTTCAGGTTCTGAATGGAGAAGCACCTCCACCTGAAGTGCCTAAGGAAAGACCAGTTTTTATGTGGCCTGCTATCCCTCCATCCTTTAAAGATGCTGAAGATAGCTCCCTCATCCAGGGAACACTCACTCCTTTCACTGAAATCATTGGAAGATGA 2100 0.4314 MIYINKGMMHHKHLKLRIGLQKSSHSLPFQNGNMQIPWIVKYHYAATLFFVTVALTKVTCFQFNFPSFPDDSNLLLLGSSRIFLDAIQVTLDSRGTIENYSGRALYRKPYQLWNQNQIASFNTTFVLRITPETTPGGEGLAFILTSDRTVPENSDGQWIGIVNATSNGTSQPGILAVEFDTRHNFKEDGPDNHVGININSINSIQQVSLINTRLSLSSGQDVKFHIQYINDTISVFCAMSGTSEESMETLLVSPPLNLSSFLQKEVYIGFSASTSNYTERNCVRSWEFSGDDIRDDDKSLLWVYVAVPIVIVSIIIGGLAIFFLRWQKTRHMEGPEDAYPRIEDQIKYSSMAPKKFRLRELTKATGGFSLQNKLGQGGFGTVYKGLLENKEVAVKRVSKNSRQGKQEFLAEVTTIGSLHHRNLVKLTGWCYENRELLLVYEFMPNGSLDKYLFXDKXCGXNYDFEGGYXITLDWETRXRVIHGVAQALDYLHDGXERXVLHRXIKASNIMLDSDYNAKLGXFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPWNVYAQDDYENSIVYRVWDLYGKGKVVGAVDGRLKKEEIMEEEVDCVLVLGLACCHPNPHKRLSMRTVLQVLNGEAPPPEVPKERPVFMWPAIPPSFKDAEDSSLIQGTLTPFTEIIGR* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0228 699 SUPERFAMILY Protein kinase-like (PK-like) 349 652 IPR011009 -
Vra8g0228 699 ProSiteProfiles Protein kinase domain profile. 368 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0228 699 Gene3D Phosphorylase Kinase; domain 1 353 442 - -
Vra8g0228 699 Gene3D - 59 300 - -
Vra8g0228 699 Gene3D Transferase(Phosphotransferase) domain 1 443 672 - -
Vra8g0228 699 ProSitePatterns Legume lectins beta-chain signature. 175 181 IPR019825 -
Vra8g0228 699 CDD STKc_IRAK 374 654 - -
Vra8g0228 699 CDD lectin_legume_LecRK_Arcelin_ConA 61 289 IPR001220 GO:0030246
Vra8g0228 699 PANTHER - 40 687 - -
Vra8g0228 699 Pfam Legume lectin domain 62 297 IPR001220 GO:0030246
Vra8g0228 699 Pfam Protein kinase domain 369 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0228 699 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 295 IPR013320 -
Vra8g0228 699 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 40 687 - -
Vra8g0228 699 ProSitePatterns Protein kinases ATP-binding region signature. 374 395 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0228 Vra-Chr8 2800912 2803752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0228 48 667 Receptor kinase-like Gene Family AT5G10530 38.949 1.46e-121 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra8g0228 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0228 - - pvu:PHAVU_007G260300g 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0228 8 2800912 2803752 Vra8g0228 8 2800912 2803752 ECH