Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0223 ATGGAACTGGCTTTGAGCTTAGGCGACACTTCCAAGCCCTTTACTTTTCTCGACAAGCCTGCTAATTTACCCTCCAAGGACCCTCCTGGGTTCTGCATAGGACCGGGTAAAGGGTTTGATGACAAAAGAAGTGATGCTGAGAAAAGGGGTTCTTCAGATCCACCGGTTCAGCTTGATCTTCTTCCTTTCACTCCCGTTCTCAGATCCCAACCTCCTTCCCAGCTACGAATCCCTTGGCTCACTGAACCATGTGGAGCGGGGAGGGTGCTGGACGTAAACCTTTTTCCGGAGGACGGCGACGACGGGACGTCACTGTCGTCGCCGAGCAGTGCGGTGTCGCCGTTTCAGATGGATTTCAGCATGAGAAACGGTAATGCAGAGTTTGGAGGAAGAAACAAGAGGGAACAACAAGAGGGTGAAGGTACCAGAGGCAGTGATGACGAAGAAAATGGCTCAACCAGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCGAAGCAGAAACTTGCTTTGGCTAAACAGTTGAATCTCCTTCCTCGTCAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAAGAGAATAGAAGGTTGCAGAAGGAGCTTCAAGAACTTCGAGCCTTGAAAACTTCTCAACCTTTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACAACAACCAACCAAACTTCTTCCACTATCAATAATGCTTCTCAAATCCCTGTCGAGTTATCTCTCAGCAAGCCCAGAATATTGCCCTTCCATAATGGCCAAGCCCAAGCAACCCAGCCACAAGCCCAAGCTCAAGCCCATCAGATACCCTCTTCATGA 972 0.4846 MELALSLGDTSKPFTFLDKPANLPSKDPPGFCIGPGKGFDDKRSDAEKRGSSDPPVQLDLLPFTPVLRSQPPSQLRIPWLTEPCGAGRVLDVNLFPEDGDDGTSLSSPSSAVSPFQMDFSMRNGNAEFGGRNKREQQEGEGTRGSDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNASQIPVELSLSKPRILPFHNGQAQATQPQAQAQAHQIPSS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0223 323 CDD homeodomain 154 211 IPR001356 GO:0003677
Vra8g0223 323 Pfam Homeodomain 154 208 IPR001356 GO:0003677
Vra8g0223 323 PANTHER - 2 303 - -
Vra8g0223 323 SMART halz 210 253 IPR003106 GO:0006355|GO:0043565
Vra8g0223 323 SMART HOX_1 152 214 IPR001356 GO:0003677
Vra8g0223 323 Coils Coil 216 246 - -
Vra8g0223 323 Gene3D - 158 208 - -
Vra8g0223 323 SUPERFAMILY Homeodomain-like 146 211 IPR009057 -
Vra8g0223 323 ProSitePatterns 'Homeobox' domain signature. 185 208 IPR017970 GO:0000981|GO:0006355
Vra8g0223 323 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 303 - -
Vra8g0223 323 Pfam Homeobox associated leucine zipper 210 244 IPR003106 GO:0006355|GO:0043565
Vra8g0223 323 MobiDBLite consensus disorder prediction 128 158 - -
Vra8g0223 323 MobiDBLite consensus disorder prediction 1 64 - -
Vra8g0223 323 CDD bZIP 203 242 - -
Vra8g0223 323 MobiDBLite consensus disorder prediction 93 158 - -
Vra8g0223 323 ProSiteProfiles 'Homeobox' domain profile. 150 210 IPR001356 GO:0003677
Vra8g0223 323 MobiDBLite consensus disorder prediction 100 120 - -
Vra8g0223 323 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0223 Vra-Chr8 2698414 2700679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0223 55 276 Homeobox Transcription Factor Family AT5G47370 55.319 8.32e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra8g0223 Homeodomain 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0223 K09338 - gmx:100779138 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0223 8 2698414 2700679 Vra8g0223 8 2698414 2700679 ECH
Vra3g0038 3 391169 394475 Vra8g0223 8 2698414 2700679 PCT