Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0220 ATGTCGTGTTGTGGAGGTGCTGAAGAGGAATTTGGCATTCCACCTGCAAACCAATACAATGCATCAGTCGAAAAGGGTAGTGTATATGGTGGTGGAGGAGGAGATAGAGGAGAGCCAAGGGGCAATATAATCAAAACTGGTGCTCCAAAAAAAGAATTACCAATTGAGATACCTGCCATCTCATTGGATAAGTTAAATCAATTAACAGACAATTTTGGTACAAACGCTTTGATAGGAGAAGGTTCTTATGGAAGGGTTTACTTTGCAAAGATGGATGGAGATGAGGAAGTTGCAATCAAAAAGCTAGATACTACTTCTTCTCCAGAACCTGACTCCGATTTTGCAACACAACTATCAGTTGTTTCAAGATTGAAAAGTGACCATTTTGTGGAATTGTTGGGATATTGTTTAGAGGAGAATAACAGAATTTTGGTTTATCAATATGCGAGTTTGGGTTCTTTGCACGACATATTACATGGAAGAAAAGGAGTACAAGGTGCTGAACCCGGTCCAGTTTTAAATTGGAGCCAAAGAGTAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAATTTCTTCATGAAAAGTGTCAACCTTCTATAGTTCATCGAGATGTTAGATCTAGCAATGTCTTACTCTTTGATGACTATGAATCCAAGATTGCAGATTTCAATTTGACAAACCAATCTTCTGACACTGCAGCTCGATTACACTCAACAAGAGTCTTGGGAACATTTGGTTATCATGCTCCAGAGTATGCAATGACAGGACAAATAACCCAAAAAAGTGATGTTTATAGTTTTGGGGTTGTTCTTTTGGAACTTTTAACTGGAAGAAAACCTGTTGACCATACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGATTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAATTAAATAATGAATACCCTCCTAAGGCAATTGCTAAGTTAGCAGCGGTTGCAGCACTTTGTGTGCAATATGAAGCTGATTTCAGGCCAAACATGACAATTGTTGTCAAAGCTCTCCAACCACTTCTCAATTCTAAACCGACTGGCCCTGATTCTAACTCTAACTCTAACGCTTAA 1110 0.3901 MSCCGGAEEEFGIPPANQYNASVEKGSVYGGGGGDRGEPRGNIIKTGAPKKELPIEIPAISLDKLNQLTDNFGTNALIGEGSYGRVYFAKMDGDEEVAIKKLDTTSSPEPDSDFATQLSVVSRLKSDHFVELLGYCLEENNRILVYQYASLGSLHDILHGRKGVQGAEPGPVLNWSQRVKIAFGAAKGLEFLHEKCQPSIVHRDVRSSNVLLFDDYESKIADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPTGPDSNSNSNA* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0220 369 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 364 - -
Vra8g0220 369 SUPERFAMILY Protein kinase-like (PK-like) 53 350 IPR011009 -
Vra8g0220 369 SMART tyrkin_6 72 350 IPR020635 GO:0004713|GO:0006468
Vra8g0220 369 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0220 369 PANTHER OS03G0226300 PROTEIN 1 364 - -
Vra8g0220 369 Pfam Protein tyrosine and serine/threonine kinase 76 350 IPR001245 GO:0004672|GO:0006468
Vra8g0220 369 Gene3D Phosphorylase Kinase; domain 1 46 148 - -
Vra8g0220 369 Gene3D Transferase(Phosphotransferase) domain 1 150 367 - -
Vra8g0220 369 ProSitePatterns Tyrosine protein kinases specific active-site signature. 200 212 IPR008266 GO:0004672|GO:0006468
Vra8g0220 369 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0220 Vra-Chr8 2644883 2648643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0220 60 357 Receptor kinase-like Gene Family AT3G58690 44.147 2.78e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vra8g0220 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0220 - - pvu:PHAVU_007G261200g 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0220 8 2644883 2648643 Vra8g0220 8 2644883 2648643 ECH
Vra3g0045 3 448767 451552 Vra8g0220 8 2644883 2648643 PCT