Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0210 ATGAGAACTTCGTGGGCAGATTCTGCTGACAATTCAGCCATTGGTTCTGGCAATGGCAATTTCTCGGCTCACCCTCCCCGAGGTGCATATGTGCCTCCGCATCTTCGCAACAGGTCATTGTCGTCGGAGGTTCCTGCAGTGTCACACTCGCCGGCTCCTTTACCGGCGAATGACAGAGGGAATCCTGGTGGTGCAGCTCCTCATCAGGGAGGTGGTTACTTTAAAGCTGATCAAGGGCGGCAACAAGGATATGGTTCTGGTTATCAGACTGGTGGTGGCTGGAATGGTAGAGGGGCGGGGAGGGACCGTGGGAGGCGTGAGGTGAACCCTTTTGAGAATGATGAAGCTGATGATAAATCTCTGGAGCAAGAGAACAGTGGGATTAACTTCGAGGCTTATGATGATATCCCTGTGGAGACTAGTGGGGACAATGTGCCCCCGCCTGTGAATACATTTGCTGAAATAGATTTGGGCGAGGCATTGAATCATAATATACAGAGATGCAAGTATGTGAAACCAACCCCGGTTCAGAGGTATGCCATTCCAATTTCCCTTTCTGGGCGAGACTTGATGGCCTGTGCTCAGACCGGGTCAGGAAAGACAGCTGCCTTTTGCTTCCCTATTATAAGTGGAATAATGAGGGAGCAATATGTTCAAAGGCCACGTGTGGCTAGAACTGCTTTTCCGCTGGCACTTATCCTCTCCCCCACACGGGAACTTTCATGTCAGATACACGATGAGGCCAAAAAGTTTTCTTACCAAACAGGTGTGAAAGTGGTGGTTGCTTATGGAGGAGCTCCAATCACCCAACAGTTACGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCTACTCCAGGAAGATTGGTGGATTTGCTCGAGAGGGCTCGGGTGTCACTGCAGATGATAAGGTATTTGGCGCTTGATGAGGCAGATCGGATGCTGGACATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCGGGCATGAGACAGACACTGTTGTTTAGTGCAACATTTCCAAAAGAGATACAGAGACTTGCATCAGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTTCTTGAGTCAGACAAGAGAAGCCATCTCATGGATCTTCTTCACGCTCAGAGGGAAAATGGAATTTACGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCGTTCAAGACTGGAAACACACCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTGGACATCCCTCGGGTAGCACATGTGGTAAATTTTGATCTTCCGAATGACATTGATGATTACGTGCACCGAATAGGAAGAACGGGGCGAGCTGGTAAAATGGGATTAGCAACGGCCTTTTTCAATGAAAGTAACGTATCCTTGGCCAAACCATTGGCTGATCTGATGCAAGAGGCTAATCAAGAAGTTCCTGCCTGGCTCACCCGTTATGCGGCAAGGGCTGCTTACAGTGGTGGTAACAGAAACAGGAGGTCAGGGGGATCCCGTTTTGGTGGTCGTGATTTTAGGAGGGAAGGCTCATTTAATAAATCAACAGAGTACTATGGCGGTGGAAACGGTGGTGGAGCTGCTGGGGGATATGGCAATTACGGTGGAGGAGGAGGGTATGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1833 0.4817 MRTSWADSADNSAIGSGNGNFSAHPPRGAYVPPHLRNRSLSSEVPAVSHSPAPLPANDRGNPGGAAPHQGGGYFKADQGRQQGYGSGYQTGGGWNGRGAGRDRGRREVNPFENDEADDKSLEQENSGINFEAYDDIPVETSGDNVPPPVNTFAEIDLGEALNHNIQRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNVSLAKPLADLMQEANQEVPAWLTRYAARAAYSGGNRNRRSGGSRFGGRDFRREGSFNKSTEYYGGGNGGGAAGGYGNYGGGGGYGQGVTSAWD* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0210 610 Pfam DEAD/DEAH box helicase 174 354 IPR011545 GO:0003676|GO:0005524
Vra8g0210 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 519 IPR027417 -
Vra8g0210 610 SMART ultradead3 169 380 IPR014001 -
Vra8g0210 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 543 IPR001650 -
Vra8g0210 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 365 IPR014001 -
Vra8g0210 610 Gene3D - 368 548 IPR027417 -
Vra8g0210 610 MobiDBLite consensus disorder prediction 1 19 - -
Vra8g0210 610 CDD DEADc_DDX3_DDX4 151 371 IPR044763 GO:0003724|GO:0005524
Vra8g0210 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Vra8g0210 610 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 38 578 - -
Vra8g0210 610 MobiDBLite consensus disorder prediction 550 569 - -
Vra8g0210 610 Gene3D - 105 367 IPR027417 -
Vra8g0210 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 578 - -
Vra8g0210 610 MobiDBLite consensus disorder prediction 99 123 - -
Vra8g0210 610 MobiDBLite consensus disorder prediction 1 123 - -
Vra8g0210 610 CDD SF2_C_DEAD 377 513 - -
Vra8g0210 610 SMART helicmild6 423 504 IPR001650 -
Vra8g0210 610 Pfam Helicase conserved C-terminal domain 390 504 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0210 Vra-Chr8 2464506 2472295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0210 134 536 Eukaryotic Initiation Factors Gene Family AT3G19760 31.034 6.16e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0210 K11594 - gmx:100818326 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0210 8 2464506 2472295 Vra8g0210 8 2464506 2472295 ECH