Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0203 ATGAGGGGAAGAAGCTACAGTTATAGTCCGTCACCTCCAAGGCATTACAGCCGAAGAAGGCGCAGTCCCAGCCCTAGGGGCAGATACAGAGGACGTGATAGAGATTTGCCAACCAGTCTTTTGGTTCGAAACCTTCACAGAGATTGCAGGGCGGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTATACAGGGGATCCAAGAGGTTTCGGGTTTGTCCAGTACGTGGACCCAGCTGATGCTGCGGATGCAAAACATCACATGGACGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTAGTGTTTGCTGAAGAAAACAGGAAGAAACCTTCTGAAATGAGAGCAAGGGAACGGAGGAGGGATCGATCATATGATTACAGGAGATCGCCTCGAACCTATTCTCCTAGTCCGGACTATTCGTCTTCTCCAAGACGAAGACGACATTACAGGTCAATCTCGCCAAGGAACAGAAAATATAGCGATCGATCATACTCTAGATCACCTTATGGATCAAGAAGCCGCAGCAGAAGCAGAAGTTACAGCAGGAGCTTGAGCGCAAGTCCTGGCTACTCCGGGTGA 612 0.4886 MRGRSYSYSPSPPRHYSRRRRSPSPRGRYRGRDRDLPTSLLVRNLHRDCRAEDLHGPFGQFGPVKDVYLPRDYYTGDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAEENRKKPSEMRARERRRDRSYDYRRSPRTYSPSPDYSSSPRRRRHYRSISPRNRKYSDRSYSRSPYGSRSRSRSRSYSRSLSASPGYSG* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0203 203 MobiDBLite consensus disorder prediction 1 35 - -
Vra8g0203 203 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 202 - -
Vra8g0203 203 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 202 - -
Vra8g0203 203 MobiDBLite consensus disorder prediction 118 139 - -
Vra8g0203 203 MobiDBLite consensus disorder prediction 118 203 - -
Vra8g0203 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Vra8g0203 203 Gene3D - 30 145 IPR012677 -
Vra8g0203 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Vra8g0203 203 SMART rrm1_1 39 112 IPR000504 GO:0003723
Vra8g0203 203 MobiDBLite consensus disorder prediction 174 203 - -
Vra8g0203 203 SUPERFAMILY RNA-binding domain, RBD 38 142 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0203 Vra-Chr8 2399548 2402725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0203 38 162 Eukaryotic Initiation Factors Gene Family AT4G34110 27.778 5.42e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0203 K12900 - gmx:100816913 208.379