Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0170 ATGGAGAAAGCAAACAACACATCACTAGTGAGAACAAAATCTGATCAGTTAGTAGAGTCTATGGTGGCGGCAATGAAGTCGCCGCCGTCGAGCGACCACTCTGCCAACGGGATGGCAGAAGGTGGTGGCAACTTGTCGAGGAAGTCGAGTCGGCGGCTGACTGGCGCGTCACCGGGACGCGGCGGCGGAGGGAAGAACACTCACATAAGAAAGTCTAGAAGTGCTCAAATAAGCCAAATGAAGTTGGATTTTGATGATTTGAGCAGTGGCGCAGCGCTCAGCAGAGCCTCAAGTGCTAGCTTGGGACTCTCTTTCTCCTTCACCGGCTTCACCATGCCTCCTGAAGAAATCGCTGACTCCAAACCCTTCAGCGACGATGATATTCCTGAAGATATCGAAGCTGGACCTAGGACAAAGTTTCAAACGGAACCTACTTTACCCATATTTCTCAAGTTCACGGATGTGAGCTACAAGATAGTGATCAAAGGCATGACAACAACTGAGGAGAAGGATATCTTGAATGGGATAACTGGTTCTGTAAATCCAGGAGAAGTTTTGGCATTGATGGGTCCCTCAGGAAGTGGAAAAACAACTCTTTTAAACCTTCTTGGAGGCAGGCTATGCCATCCTATAAGTAGTGGATCTATCACTTACAATGATCAACCATACTCTAAGTTCCTTAAGAGCAGGATAGGATTTGTGACACAAGATGATGTTCTGTTTCCCCACTTAACTGTGAGAGAGACTTTGACATACGCGGCCAGGCTAAGGCTTCCAAAGACATTCACAAAGGAGCAAAAGGAAAAACGAGCTTTGGATGTAATCTATGAGCTTGGCTTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCTTTTGTGCGTGGAGTTTCTGGTGGTGAGAGGAAGAGAGTTTGTATTGGAAATGAGATCATAATCAACCCTTCTCTTCTTTTTCTTGATGAACCAACATCTGGTTTGGATTCCACAACAGCCTTGAGGATCGTTCAGATGCTACAAGACATAGCAGAGGCTGGTAAAACAGTGGTGACAACAATCCACCAACCATCTAGCAGACTATTTCACAAATTTGACAAGCTGATCCTTCTGGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCAGAAGCAATGACTTACTTCCAGTCTATAGGATGTTCACCACTTATTTCCATGAACCCAGCAGAGTTTTTGCTAGACCTTGCCAATGGAAACATAAATGATGTCTCCCTACCCTCAGAGTTGGAAGATAGAGTGCACATGGAAAATGCAGAAGCAGAAACACCAAATGGGAAACCATCACCAGCAGTTGTACACGAGTATCTGGTGGAGGCATATGAAACTCGAGTAGCAGAAACAGAAAAGAAAAGACTAATGATTCCTATACCTCTTGATGAAGCAGTGAAGTCTAAAGTGTGTTCTCATAAGAGACAATGGGGAGCAAGTTGGGATGAGCAATATTCCATATTATTTTGGAGAGGAATCAAAGAACGTAGACATGACTATTTTAGCTGGTTAAGAATCACTCAAGTTTTATCTACTGCTGTCATCTTAGGATTGCTCTGGTGGCAATCAGATACTAAAAACCCAAAAGATCTGCAAGATCAGGCAGGATTGCTATTCTTCATTGCTGTTTTCTGGGGATTTTTTCCTGTTTTCACTGCAATATTCACATTTCCTCAAGAAAGAGCCATGCTGAGTAAGGAGAGAGCAGCAGATATGTACAGACTAAGTGCATACTTTCTGGCTAGAACCACCAGTGACCTTCCACTTGACCTCATTTTACCAGTGCTTTTCCTACTTGTTGTTTATTTTATGGCCGGTCTCAGACTCAGTGTTGCACCATTTTTCCTCACAATTCTCACTGTCTTCCTCTGTATAGTGGCTGCTCAGGGACTTGGACTAGCTATTGGAGCCACATTAATGGACTTGAAAAGAGCAACAACTTTAGCTTCAGTTACTGTGATGACCTTCATGCTGGCTGGAGGATTTTTTGTGCAGAGAGTACCCATATTTTTTTCATGGATTCGGTACATGTCATTCAACTACCACACCTACAAACTTCTGCTGAAGGTGCAATATGAACACATTTCACCAATCATAAATGGTATCAGAATTGATAGTGGTGCAACAGAGGTAGCTGCTCTAATAGCCATGGTTTTTGGCTACCGTTTCTTGGCATATCTTTCTCTAAGGAGAATGAAACTTCAATCTGGAGCTTAA 2241 0.4351 MEKANNTSLVRTKSDQLVESMVAAMKSPPSSDHSANGMAEGGGNLSRKSSRRLTGASPGRGGGGKNTHIRKSRSAQISQMKLDFDDLSSGAALSRASSASLGLSFSFTGFTMPPEEIADSKPFSDDDIPEDIEAGPRTKFQTEPTLPIFLKFTDVSYKIVIKGMTTTEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLCHPISSGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVRETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMTYFQSIGCSPLISMNPAEFLLDLANGNINDVSLPSELEDRVHMENAEAETPNGKPSPAVVHEYLVEAYETRVAETEKKRLMIPIPLDEAVKSKVCSHKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSVAPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQRVPIFFSWIRYMSFNYHTYKLLLKVQYEHISPIINGIRIDSGATEVAALIAMVFGYRFLAYLSLRRMKLQSGA* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0170 746 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 396 IPR003439 GO:0005524
Vra8g0170 746 CDD ABCG_EPDR 147 378 - -
Vra8g0170 746 MobiDBLite consensus disorder prediction 1 15 - -
Vra8g0170 746 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 11 740 - -
Vra8g0170 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 388 IPR027417 -
Vra8g0170 746 MobiDBLite consensus disorder prediction 1 75 - -
Vra8g0170 746 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 11 740 - -
Vra8g0170 746 Pfam ABC transporter 173 324 IPR003439 GO:0005524
Vra8g0170 746 SMART AAA_5 182 373 IPR003593 -
Vra8g0170 746 Pfam ABC-2 type transporter 353 414 IPR043926 GO:0140359
Vra8g0170 746 Gene3D - 149 390 IPR027417 -
Vra8g0170 746 Pfam ABC-2 type transporter 491 700 IPR013525 GO:0016020|GO:0140359
Vra8g0170 746 ProSitePatterns ABC transporters family signature. 296 310 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0170 Vra-Chr8 1987352 1996872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0170 117 410 Calmodulin-binding Proteins AT2G36910 27.667 2.53e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0170 K05681 - gmx:100798801 1370.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0170 8 1987352 1996872 Vra8g0170 8 1987352 1996872 ECH
Vra3g0628 3 6853792 6862495 Vra8g0170 8 1987352 1996872 PCT