Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0164 ATGGAGGTTCCAGAAATGGGAGGCAAGACCGAAACCCATTTGACATCAGCAGCAGCCTTTGTGGAAGGGGGGATTCAAGAAGCATGTGATGATTCTTGTAGCATATGCCTTGAGAATTTTAGCAAAAGTGATCCTGCAACTGTCACTAATTGCAAGCATGACTTCCATCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCTCAATGCCCTATGTGTTGGCAAGCTATCAGCTTGAAGGATGCTACCAGTCAAGAACTGCTCGAGGCAGTAGAGCAGGAGAGGAGCTTGAGGGATATCCCATCCAGAAATGCTTCAATTTTTCATCTTTCGCAGCTTGAATTTCAGCAGTTACCAATGCGTGATTCTGATATCGAAGAGCGAATCCTTCGACATTTAGCTGCTGCAGCATCAATGAGGAGAGCACACCATCTTGGCCGGAGGGAAAGTCAACGAACTAGGTCATCTGGTCATGGCAATGCACACTCCGTAGTGTACTCAACTCAGCCTAGAGCACCTCCATCAGCTACTGGAGCGGGTAGTGAACCAGCTGCAATTCCTGCAGGAAATCCATCTGCTCCTCTTATATTTGATGGAACACAGCAATCATCACCACAGCAGAGGCCCCTATTACAAACTCGGAGTTCTTCTTCTTTTACTTCTGGCTCTACAGTCGCAACAACAAATCTTCAAGGAGTTCACTCTAATGATGGCTTTGCCTCTCATTCCTTGCCTGCAAGCCATGATGAACCAGAGCCATCAGAACAATCATTCTCAGATTCTCTCCTTTCCAAATTTAGTGCAGTATCCATGAGATACAAAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCAGTGTCAGAACTTGGTTCTGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTGTCCCGATTGATTGAGCGCCTTGAAACAGCAAGAGAAAATAAGAGCGCTGCAGGCACTTCTGTATCAAATCATTCCAATGCAGAGACCAGCAACAACCAAAACAATGTGGAAGTTCACGAAGAGAACTCTTTTCCTGGCAGTAATACTTCTGCTACTTTTTCTGCCGCCCCAGATTCAAAGCAAAACACTTGCTCAGATATGACATGGTGA 1149 0.4534 MEVPEMGGKTETHLTSAAAFVEGGIQEACDDSCSICLENFSKSDPATVTNCKHDFHLQCILEWCQRSSQCPMCWQAISLKDATSQELLEAVEQERSLRDIPSRNASIFHLSQLEFQQLPMRDSDIEERILRHLAAAASMRRAHHLGRRESQRTRSSGHGNAHSVVYSTQPRAPPSATGAGSEPAAIPAGNPSAPLIFDGTQQSSPQQRPLLQTRSSSSFTSGSTVATTNLQGVHSNDGFASHSLPASHDEPEPSEQSFSDSLLSKFSAVSMRYKESISKGTRGWKERLFSPNSSVSELGSEVRRELNAKIASVSRLIERLETARENKSAAGTSVSNHSNAETSNNQNNVEVHEENSFPGSNTSATFSAAPDSKQNTCSDMTW* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0164 382 MobiDBLite consensus disorder prediction 195 242 - -
Vra8g0164 382 MobiDBLite consensus disorder prediction 139 260 - -
Vra8g0164 382 MobiDBLite consensus disorder prediction 326 382 - -
Vra8g0164 382 Coils Coil 303 323 - -
Vra8g0164 382 Pfam Ring finger domain 31 73 IPR001841 -
Vra8g0164 382 MobiDBLite consensus disorder prediction 156 175 - -
Vra8g0164 382 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 365 - -
Vra8g0164 382 SMART ring_2 33 73 IPR001841 -
Vra8g0164 382 SUPERFAMILY RING/U-box 26 80 - -
Vra8g0164 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 83 IPR013083 -
Vra8g0164 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 9 365 - -
Vra8g0164 382 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Vra8g0164 382 MobiDBLite consensus disorder prediction 324 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0164 Vra-Chr8 1916153 1921082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0164 30 81 C3H Transcription Factor Family AT4G00335 42.308 4.16e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0164 K19043 - gmx:100803582 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0164 8 1916153 1921082 Vra8g0164 8 1916153 1921082 ECH
Vra3g0625 3 6833704 6837336 Vra8g0164 8 1916153 1921082 PCT