Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0160 ATGGGAAACAACTGTGTTGGATCGAGAACCTCTACTTCTAATGCCGGAACTCGTGGCTCTGCTATTTCTAGTTCATACTGGTGGTGTCGTGGACAAAAGAAAGATTCTTCTCAAGCACAGAAAGGTGGCAAAAAGAAGACAAAATCCGTAGAAACTGTTCAAGATCAGCCTCCAGAGATAGTGAAAATTGAGAGTGATGAGGTGAAGCCTCCTCGTCAAGCCACAGAGACTATACCACCTCCGGAACAAACAAGGGCGCAGCCCCAAAAACCAAAGAGGCCACCCAATGTGAAGAAGCCGGCAAGTGCAGGCCTCAAAGCAGATTCTGTTTTGCTAAGGAAAACCGGCAACCTTAAGGAGAACTACAATTTGGGACCAAAGCTTGGACAAGGCCAGTTCGGAACTACTTTCCTTTGTGTGGAGAAGGCTACTGGGAAAGAGTATGCATGCAAGTCCATATTGAAGAGGAAGCTGGTAACAGAGGAAGATGTGGAGGATGTGAGGAGGGAAATTCAGATAATGCACCACTTGGCAGGCAGTCCTGATGTGATCTCAATCAAGGAGGCTTTTGAGGATGCTGTTTCAGTTCATGTTGTTATGGAGCTGTGTGCTGGGGGTGAGCTCTTTGATAGGATTGTCGAAAGAGGGCATTACACTGAGAGAAAGGCAGCCAAGCTTGCAAGAACAATAGTTGGTGTCATTGAGTCTTGCCACTCTCTTGGAGTCATGCATAGGGATCTTAAGCCTGAGAATTTTCTCTTTGTTAATCAACAAGAAGAATCCCCTCTCAAGGCTATAGACTTTGGACTTTCTGCTTTTTTCAAACCAGGAGAAATTTTCAATGACGTAGTAGGAAGTCCCTATTATGTAGCACCTGAAGTTCTACGCAAGCGTTATGGCCCCGAAGCAGATGTATGGAGTGCTGGTGTCATCATATACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGAGAAACGGAGCAAGAGATATTCGACGCAATTTTGCATAATCAAGCCGATTTCTCATCGGATCCATGGCCTTCCGTATCTGCAAGTGCAAAAGACTTGGTCAAGAAGATGCTTGTCAGAGACCCTAGTAAACGGATATCAGCTTTTGACGTTCTTCGTCACCCCTGGATTCAAGTTGATGGAGAAGCTCCTGACAAGCCGCTTGATTCTGCAGTTTTAAGTCGCCTAAAGCAGTTTTATGCAATGAACAAACTCAAGAAAATGGCTCTCAGAGTTATAGCACAGAATCTCTCTGAAGAAGAAATTGCAGGGTTGAAAGAAATGTTTAAGGCGATAGACACAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAGGTTGGACTGAAAAAGTTTGGTGCTAATCTCAATGAATCTGAAATTTACGACCTTATGCAAGCAGCAGATGTTGATAACAGTGGCACAATTGACTACGGAGAATTCATAGCTGCAACATTGCATCTCAACAAGGTTGACAGAGAAGATCATTTAGTTGCAGCTTTTGCTTATTTTGATAAAGATGGAAGTGGCTACATCACCCAAGATGAGCTTCAACAAGCTTGCGAAGAATTTGGCATTGGAGATGTTCGCTTGGAGGAAATGATCCGAGAAGCTGATCAAGATAATGATGGACGAATAGACTACAATGAATTTGTGGCTATGATGCAGAAAGGCAATGCAGATTTGAGTAAGAGGGGACGAAAGGGTAGCACTAGTTTTAGAATATTTAGGGAGGCATTACCGGTGTGTTAA 1761 0.4367 MGNNCVGSRTSTSNAGTRGSAISSSYWWCRGQKKDSSQAQKGGKKKTKSVETVQDQPPEIVKIESDEVKPPRQATETIPPPEQTRAQPQKPKRPPNVKKPASAGLKADSVLLRKTGNLKENYNLGPKLGQGQFGTTFLCVEKATGKEYACKSILKRKLVTEEDVEDVRREIQIMHHLAGSPDVISIKEAFEDAVSVHVVMELCAGGELFDRIVERGHYTERKAAKLARTIVGVIESCHSLGVMHRDLKPENFLFVNQQEESPLKAIDFGLSAFFKPGEIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVIIYILLCGVPPFWGETEQEIFDAILHNQADFSSDPWPSVSASAKDLVKKMLVRDPSKRISAFDVLRHPWIQVDGEAPDKPLDSAVLSRLKQFYAMNKLKKMALRVIAQNLSEEEIAGLKEMFKAIDTDNSGQITFEELKVGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFAYFDKDGSGYITQDELQQACEEFGIGDVRLEEMIREADQDNDGRIDYNEFVAMMQKGNADLSKRGRKGSTSFRIFREALPVC* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0160 586 Pfam Protein kinase domain 122 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0160 586 Gene3D Transferase(Phosphotransferase) domain 1 208 404 - -
Vra8g0160 586 MobiDBLite consensus disorder prediction 37 52 - -
Vra8g0160 586 CDD EFh 428 487 IPR002048 GO:0005509
Vra8g0160 586 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Vra8g0160 586 CDD STKc_CAMK 121 379 - -
Vra8g0160 586 SUPERFAMILY Protein kinase-like (PK-like) 120 381 IPR011009 -
Vra8g0160 586 MobiDBLite consensus disorder prediction 1 110 - -
Vra8g0160 586 ProSiteProfiles EF-hand calcium-binding domain profile. 533 564 IPR002048 GO:0005509
Vra8g0160 586 Pfam EF-hand domain pair 441 490 IPR002048 GO:0005509
Vra8g0160 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Vra8g0160 586 Gene3D Phosphorylase Kinase; domain 1 125 207 - -
Vra8g0160 586 SUPERFAMILY EF-hand 419 560 IPR011992 -
Vra8g0160 586 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Vra8g0160 586 ProSiteProfiles Protein kinase domain profile. 122 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0160 586 SMART serkin_6 122 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0160 586 ProSitePatterns EF-hand calcium-binding domain. 542 554 IPR018247 -
Vra8g0160 586 CDD EFh 499 559 IPR002048 GO:0005509
Vra8g0160 586 Pfam EF-hand domain pair 500 559 IPR002048 GO:0005509
Vra8g0160 586 ProSitePatterns Protein kinases ATP-binding region signature. 128 155 IPR017441 GO:0005524
Vra8g0160 586 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Vra8g0160 586 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Vra8g0160 586 PANTHER CALCIUM-DEPENDENT KINASE 26 571 - -
Vra8g0160 586 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 571 - -
Vra8g0160 586 MobiDBLite consensus disorder prediction 1 36 - -
Vra8g0160 586 ProSiteProfiles EF-hand calcium-binding domain profile. 495 530 IPR002048 GO:0005509
Vra8g0160 586 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Vra8g0160 586 SMART efh_1 427 455 IPR002048 GO:0005509
Vra8g0160 586 SMART efh_1 499 527 IPR002048 GO:0005509
Vra8g0160 586 SMART efh_1 463 491 IPR002048 GO:0005509
Vra8g0160 586 SMART efh_1 533 561 IPR002048 GO:0005509
Vra8g0160 586 Gene3D - 405 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0160 Vra-Chr8 1879272 1883837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0160 44 562 EF-hand Containing Proteins AT3G10660 73.458 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra8g0160 Pkinase 9.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0160 K13412 - gmx:100783079 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0160 8 1879272 1883837 Vra3g0622 3 6814145 6818430 PCT