Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0153 ATGAACAATACAAGTGATTCATCTGGGTACCTTGGCTCCAGCAACATAAGTGGCTTTGGCATGGGCATCGGAATTTCAATTGGGATTCTTCTGCTTATCACAACCATCACACTCACCTCCTACTTCTGCACCAGATCACAGGTACCAACTGCTCCAAGGAGAAGAACTTCTTCTGGCCCACAATTCCTCGAGCCACAGCATACAGTAATTGATGTTGGGTTGGATGAAGCCACAATCATGAACTACCCCAAGATGCTGTACTCTGAAGCCAAGCTAAGGAAATCTGATTCCACAGCAACAAGCTGTTCCATATGTCTGGGAGATTACAAAAGTTCTGATGTGCTAAGGGTTTTGCCAGATTGTGAACATGTCTTTCACCTCAATTGCATAGACCCATGGTTGAGGCTGCATCCAACTTGTCCTCTCTGCAGAACATCTCCTATCCCAACACCTCTCTCGACACCTCTTGCAGAAGTTGTCCCGTTAGCAACAAGGCGAGATTAA 504 0.4603 MNNTSDSSGYLGSSNISGFGMGIGISIGILLLITTITLTSYFCTRSQVPTAPRRRTSSGPQFLEPQHTVIDVGLDEATIMNYPKMLYSEAKLRKSDSTATSCSICLGDYKSSDVLRVLPDCEHVFHLNCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0153 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Vra8g0153 167 SUPERFAMILY RING/U-box 78 149 - -
Vra8g0153 167 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 165 - -
Vra8g0153 167 CDD RING-H2_PA-TM-RING 102 144 - -
Vra8g0153 167 Pfam Ring finger domain 101 144 IPR001841 -
Vra8g0153 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 165 IPR045899 -
Vra8g0153 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 148 IPR013083 -
Vra8g0153 167 SMART ring_2 102 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0153 Vra-Chr8 1739711 1740541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0153 6 164 C3H Transcription Factor Family AT2G35910 61.111 2.86e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0153 - - gmx:100796149 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0616 3 6767827 6768409 Vra8g0153 8 1739711 1740541 PCT