Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0152 ATGTCGACATGCGTACCCAATTGTATTTTTGCACCTTACTTTAGGTCTGATGAGTGCAATAAGTTTGCCAAGGTGCACAAGGTATTTGGAGCTAGCAATGTAAGCAAGATCTTGATCGAAGTGTCGGAAGAGCAGAGAGAGGACACCGTCAATTCTCTCGCATATGAGGCAGAGGCAAAGCTCAGAGGCCTCGTTTATGGATGCATTGATGCCATAGCTTTGTTGCAGAGGAAGATGGTTGAGCTTCAACATGATCTCGCCATTGCTAAGGATCGTCTTGCACGATGTCACGCTGCTGCTACTGTTCTCCCTTCTCCTGATATCTTGCGTGCCCATGTTAGCCTCCCTCCATTCCCTAACTTTTGCACTTCCTCCAATGATTTCAATGATATCTTCTGCCACAGTTCATCATCTCAATTATTCAGCCGCCACGAAACGGTTGATGATTTCAACCAAATCCCATATATATTTTAA 474 0.4473 MSTCVPNCIFAPYFRSDECNKFAKVHKVFGASNVSKILIEVSEEQREDTVNSLAYEAEAKLRGLVYGCIDAIALLQRKMVELQHDLAIAKDRLARCHAAATVLPSPDILRAHVSLPPFPNFCTSSNDFNDIFCHSSSSQLFSRHETVDDFNQIPYIF* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0152 157 Coils Coil 72 92 - -
Vra8g0152 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 4 151 - -
Vra8g0152 157 Pfam Lateral organ boundaries (LOB) domain 3 90 IPR004883 -
Vra8g0152 157 ProSiteProfiles LOB domain profile. 1 93 IPR004883 -
Vra8g0152 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0152 Vra-Chr8 1731161 1731702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0152 4 93 AS2 family AT3G11090 73.333 1.71e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra8g0152 LOB 6.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0152 - - vra:106770030 321.627