Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0150 ATGGCGATGCGGACTGCTTACCTGAAAGAACACGAAGGAATTGTTCACAATTCTGTTGGACAGTTGTCATCTGGAACTTCAGCTCCATGGTGGAATGGCTTAGGATCTCAACCAGTTTATGGAGATTATTGTGGCCAAAACAAGCCCTTTTCGCTGGAGTTTTCGAACTACATCGACCCTTTTTCTGGTGGTAAGCAAGCAGTACGAGGAGCGGAGCCAGTGATCAATAGAGGACATGCAACCCAGTTTTCCATCTTTCCAGATGAATGTAAAATGTTAGGCCATGCCCAAAATCCTCAGCCAGCCTTAGGACTGCAGCCATCACTTGCTGAGCCCACAAACAATTTCGACATAGGGTTTAATCAGCCTAAGATGTGTGCACCACATCCCTGTGTGGATCAATTCTGTGGGCTCTCAGCTTATGCACCTCAAATTTCGTACCATGGAATCATCAGACGAAGGCAGTCACGTGCTAAGGCTGTTCTTGAGAATAAATACATCAAACGTCGCAAGCCTTACATGCACGAGTCACGCCATCTACATGCAATGAGGCGACCAAGAGGAAATGGTGGTCGCTTCTTGAACACAAGAAAGAACAATAATGGAAATGGTGGAAATGATTCTGATGTGAATAAAATGGGTGGCCTACAATTTCTGTCCAGTACCTCTCAGAGTTCTGAAATGCTGCAATCTGATGTTGGAATGAATTCACCAATGGAGACAGATGAATGCAGTGTAAACATGTCTAGCTCAGAAGTGAATAGCATGTATTCGAGGGAAGGTTTCGATGGCTTTCCTGTGTATCCTCTTGGATCTCCTGCCGATTCGTTAACTAACATGGTAGGTAGTGAAAGTGGTGTTAGCATGCCCACTAGATGGGCTTGA 885 0.452 MAMRTAYLKEHEGIVHNSVGQLSSGTSAPWWNGLGSQPVYGDYCGQNKPFSLEFSNYIDPFSGGKQAVRGAEPVINRGHATQFSIFPDECKMLGHAQNPQPALGLQPSLAEPTNNFDIGFNQPKMCAPHPCVDQFCGLSAYAPQISYHGIIRRRQSRAKAVLENKYIKRRKPYMHESRHLHAMRRPRGNGGRFLNTRKNNNGNGGNDSDVNKMGGLQFLSSTSQSSEMLQSDVGMNSPMETDECSVNMSSSEVNSMYSREGFDGFPVYPLGSPADSLTNMVGSESGVSMPTRWA* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0150 294 PRINTS CCAAT-binding transcription factor subunit B signature 139 161 IPR001289 GO:0003700|GO:0006355
Vra8g0150 294 PRINTS CCAAT-binding transcription factor subunit B signature 170 193 IPR001289 GO:0003700|GO:0006355
Vra8g0150 294 MobiDBLite consensus disorder prediction 193 215 - -
Vra8g0150 294 SMART cbf3 135 196 IPR001289 GO:0003700|GO:0006355
Vra8g0150 294 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 147 293 - -
Vra8g0150 294 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 146 - -
Vra8g0150 294 MobiDBLite consensus disorder prediction 184 215 - -
Vra8g0150 294 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 147 293 IPR001289 GO:0003700|GO:0006355
Vra8g0150 294 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 146 IPR001289 GO:0003700|GO:0006355
Vra8g0150 294 Gene3D - 141 197 - -
Vra8g0150 294 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 147 193 IPR001289 GO:0003700|GO:0006355
Vra8g0150 294 ProSiteProfiles NF-YA/HAP2 family profile. 136 196 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0150 Vra-Chr8 1704839 1709057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0150 22 293 CCAAT-HAP2 Transcription Factor Family AT3G05690 34.304 1.99e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vra8g0150 CBFB_NFYA 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0150 K08064 - gmx:100808195 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0615 3 6730591 6735325 Vra8g0150 8 1704839 1709057 PCT