Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0147 ATGGCTGCTTCTTCCCTTATCTTCAACAGTTCACTCTCCTTTAACTTCTCACACACTGTCATATCCTTCAGACCTCAAAACCTGAAGCCACAATTTTCCATTTCTTCTGCGATCTCACTTTGCCATCTTCCCCTGTCTTTGGTTTCCTTCCAAGACACTCAAAACCCCATACAGGATGAAACCCTGCAAAAAACAGAGCCAAATGCCTCACTCTTCTACCATTCAGCGAGACTCTTTGTGGGAAACTTGCCTTATTCGTTGCCCTCTTCTCAGTTGGCTCAGCGGTTTGGAGAGGCTGGCAATGTTGTATCCGTTGAGATTGTGTGTGATGACATTACGGATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTGGAGGAAGCTGAATGTGCAATTCGAATGTTTGATGGCTCTGAAATTGGAGGTAGGATTATTAAGGTAAACATCGCGGAAATACCCAGAAAAGGAAAATGGAGAGTAATGGGTTCAAACTATAGAGGCTTTGTAGACAGCCCTCACAAGATTTATGCTGGAAACCTTGGTTGGGGTGTGACTTCACAGTGTCTTAGAGATGCCTTTGTTGAGCTGCCAGGCTTCCTGAGTGCCAAAGTCATCTATGAAAGGAACAGTGGGAAGTCTCTGGGATATGGGTTTGTCTCTTTTCGAACTGCTGAGGATGTAGAGGCTGCTTTGAATTCTATGAATGGAGTGGATGTTCAAGGCAGGCCCTTACGACTGAATCTAGCTGCAGGATAA 762 0.4514 MAASSLIFNSSLSFNFSHTVISFRPQNLKPQFSISSAISLCHLPLSLVSFQDTQNPIQDETLQKTEPNASLFYHSARLFVGNLPYSLPSSQLAQRFGEAGNVVSVEIVCDDITDRSRGFAFVTMGSVEEAECAIRMFDGSEIGGRIIKVNIAEIPRKGKWRVMGSNYRGFVDSPHKIYAGNLGWGVTSQCLRDAFVELPGFLSAKVIYERNSGKSLGYGFVSFRTAEDVEAALNSMNGVDVQGRPLRLNLAAG* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0147 253 Gene3D - 49 159 IPR012677 -
Vra8g0147 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 253 IPR000504 GO:0003723
Vra8g0147 253 SMART rrm1_1 176 249 IPR000504 GO:0003723
Vra8g0147 253 SMART rrm1_1 77 150 IPR000504 GO:0003723
Vra8g0147 253 CDD RRM_HP0827_like 77 153 - -
Vra8g0147 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 247 IPR000504 GO:0003723
Vra8g0147 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 148 IPR000504 GO:0003723
Vra8g0147 253 SUPERFAMILY RNA-binding domain, RBD 172 251 IPR035979 GO:0003676
Vra8g0147 253 Gene3D - 160 253 IPR012677 -
Vra8g0147 253 PANTHER OS02G0815200 PROTEIN 4 69 - -
Vra8g0147 253 PANTHER OS02G0815200 PROTEIN 74 252 - -
Vra8g0147 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
Vra8g0147 253 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 74 252 - -
Vra8g0147 253 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 4 69 - -
Vra8g0147 253 SUPERFAMILY RNA-binding domain, RBD 73 153 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0147 Vra-Chr8 1666868 1669879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0147 78 251 Eukaryotic Initiation Factors Gene Family AT4G34110 27.933 9.36e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0147 - - vra:106769956 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0147 8 1666868 1669879 Vra8g0147 8 1666868 1669879 ECH