Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0146 ATGAACGACTTGTTCTCCGGCTCCTTCACCCGCAACAGCGACCAAGCCTCGCCGGACCACCACCACCACGTGGTCGAGATGGCGGCGGTGGAGGGCGGCGTGAACCTGGAGAAATTCTTTGAGGAAGTTGAGCCGGTAAAAGCAGAGTTAAAAGAGCTAGAGCGTCTCCATGAGAACTTACGTGGTTCCCACGAAAAAAGCAAGACCCTTCACAGTGCTAATGCTGTGAAAGAGCTTCGCTCGCGCATGGACGCGGATGTAGCACTGGCTTTAAAGAAAGCCAAGCTCATCAAGGTCCGGCTCGAAGCTCTGGACCGGTCCAATCAGACAAGCCGAAACCTGCCTGGTTCTGGACCGGGTTCTTCCTCCGACAGGACTAGAACATCTGTCGTGAGCGGATTGAGGAAGAATCTGAAAGACTCCATGGACAACTTCAATAGCCTTAGGCAACAGATATCGACGGAGTACAGGGAAACCGTGCAGCGGAGATATTATACTGTTACCGGAGAGAACCCTGATGACAAAACCATCGACCTTCTCATTTCTACCGGTGAGAGTGAAACATTTTTGCAGAAAGCGATTCAGCAGCAAGGTAGAGCGAGTGTGATGGATACGATCCAAGAGATTCAAGAGAGGCACGACACAGTGAAAGAGATAGAGCGAAACCTGAAGGAGCTGCACCAGGTCTTCCTAGACATGGCTGTGTTGGTGCAGTCCCAGGGAGAGCAATTGGACGACATCGAGAGCCATGTAGCACGTGCCAACTCGTACGTGCGAGGTGGGGTCCAGCAGCTCCAAGTAGCAAGGAAGCACCAGAAAAACACGCGAAAGTGGACCTGCTACGCCATCATTTTGCTCATCATTATCATTTTGATCATAGTTCTCCCCATAGTTCTGAGAAATTAA 906 0.5121 MNDLFSGSFTRNSDQASPDHHHHVVEMAAVEGGVNLEKFFEEVEPVKAELKELERLHENLRGSHEKSKTLHSANAVKELRSRMDADVALALKKAKLIKVRLEALDRSNQTSRNLPGSGPGSSSDRTRTSVVSGLRKNLKDSMDNFNSLRQQISTEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLKELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLQVARKHQKNTRKWTCYAIILLIIIILIIVLPIVLRN* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0146 301 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020|GO:0016192
Vra8g0146 301 MobiDBLite consensus disorder prediction 1 20 - -
Vra8g0146 301 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Vra8g0146 301 Coils Coil 36 56 - -
Vra8g0146 301 CDD SNARE_syntaxin1-like 205 266 - -
Vra8g0146 301 Coils Coil 131 151 - -
Vra8g0146 301 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 13 296 - -
Vra8g0146 301 SMART tSNARE_6 201 268 IPR000727 -
Vra8g0146 301 MobiDBLite consensus disorder prediction 108 130 - -
Vra8g0146 301 CDD SynN 36 193 IPR006011 GO:0016020
Vra8g0146 301 Gene3D - 34 166 - -
Vra8g0146 301 SMART SynN_4 31 157 IPR006011 GO:0016020
Vra8g0146 301 Pfam SNARE domain 242 294 IPR000727 -
Vra8g0146 301 PANTHER SYNTAXIN 13 296 IPR045242 -
Vra8g0146 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Vra8g0146 301 Gene3D - 195 299 - -
Vra8g0146 301 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0146 Vra-Chr8 1660812 1662938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0146 28 280 SNARE and Associated Proteins AT3G11820 74.308 3.06e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0146 K08486 - gmx:100793347 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0146 8 1660812 1662938 Vra8g0146 8 1660812 1662938 ECH
Vra3g0612 3 6711454 6713651 Vra8g0146 8 1660812 1662938 PCT