Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0145 ATGAACGACTTGATCTCCGGTTCCTTCTCTCGCTTCCGCGGCGACCAGGCCTCCCCGGACCGCCACCACGTCATCGAGATGTCTGGCGCCGGTGACGGGCACGCCGGCGGGAAAGTGAACCTCGACAAGTTCTTTGAGGACGTGGAGGGCGTTAAGGAGGAGCTGAAGGAGTTGGAGGGACTGGCGCAGAGTCTGAGGAGCAGCCACGAGCAGAGCAAGACGCTGCACAACGCCAACGCCATCAGGGACCTCCGTTCGCGCATGGACGGTGACGTTTCGGTGGCTCTCAAGAAGGCCAAGCTCATCAAGCTCAAGCTCGAGGCTCTCGACCGCAACAACGCCGCCAACCGGAACCTGCCAGGCTGCGGACCTGGTTCCTCCTCGGACAGAACCCGGACCTCCGTGGTCAACGGGCTGAAGAAAAAGCTGAGGGACTCTATGGAGAACTTCAACGAGATTCGGCAGCTCGTGTCGTCGGAGTACCGGGAGACTGTGCAGCGCCGCTACTTCACCGTCACCGGCGAGAATCCCGATGATAACACGCTCGATCTCTTGATCTCCACTGGTGAGAGTGAGACTTTCCTTCAGAAGGCCATTCAAGAGCAAGGCAGGGGTAGGATTCTGGACACCATCAATGAGATTCAAGAGAGACATGATGCTGTCAAAGAGTTGGAGAAGAGTCTCAAGGAGTTGCACCAAGTATTCCTTGACATGACGGTTTTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCAATCGTTTGTGCACACTGGAACTGAGCATTTGCAGACAGCACGAAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGTATCATACTTCTTCTGGTGATCATCTTGGTTGTGGTGCTCTTCATTGTGAAGCCATGGGAAAAAAGCAGTAGTGGCGGCAATGGTGGTAATCAGTCTCCACAAGTTCAAACACCACCTTCGCCTCCACCTCCTGCTTAG 999 0.5465 MNDLISGSFSRFRGDQASPDRHHVIEMSGAGDGHAGGKVNLDKFFEDVEGVKEELKELEGLAQSLRSSHEQSKTLHNANAIRDLRSRMDGDVSVALKKAKLIKLKLEALDRNNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLRDSMENFNEIRQLVSSEYRETVQRRYFTVTGENPDDNTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAQSFVHTGTEHLQTARKHQKNTRKWTCYCIILLLVIILVVVLFIVKPWEKSSSGGNGGNQSPQVQTPPSPPPPA* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0145 332 Pfam SNARE domain 247 299 IPR000727 -
Vra8g0145 332 SMART SynN_4 36 162 IPR006011 GO:0016020
Vra8g0145 332 CDD SNARE_syntaxin1-like 210 272 - -
Vra8g0145 332 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Vra8g0145 332 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 311 - -
Vra8g0145 332 Gene3D - 39 171 - -
Vra8g0145 332 Coils Coil 211 231 - -
Vra8g0145 332 CDD SynN 41 198 IPR006011 GO:0016020
Vra8g0145 332 MobiDBLite consensus disorder prediction 309 332 - -
Vra8g0145 332 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra8g0145 332 PANTHER SYNTAXIN 7 311 IPR045242 -
Vra8g0145 332 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Vra8g0145 332 Gene3D - 207 304 - -
Vra8g0145 332 SMART tSNARE_6 206 273 IPR000727 -
Vra8g0145 332 Coils Coil 41 68 - -
Vra8g0145 332 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0145 Vra-Chr8 1657152 1660070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0145 33 329 SNARE and Associated Proteins AT3G11820 74.671 3.45e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0145 K08486 - gmx:100809258 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0611 3 6705693 6706607 Vra8g0145 8 1657152 1660070 PCT