Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0141 ATGGACGAAATCGACGTGCCTCCCTTCTTCCTCTGTCCGATCTCCCTCGAACTCATGAAAGACCCCGTGACAGTCTCCACCGGAATCACCTACGACCGCCACAGCATCGAGAAATGGCTCTTCGCCTCCAACAACGACACGTGTCCCGTCACCAAGCAGCCTCTCCTCCCAGACCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAGGCCTGGTGCACCGTCAACGCCTCCCGTGGCATCCAACGAATCCCAACGCCCAAGCCCCCCGTCGACAAAACCATCATCCAAAACCTTCTCAACGACGCTTCCGGCTCCCCCAACCTCCAGCTTCGGTGCCTCCGAACCCTAAAATCCATCGCTTCCGAGTCCCAAACCAACAAACGCTCCATCGAATCCGCAGGCGCTGTTAAATTCCTAGCTTCGGTTATAACCAACACTGTAAACTCCTGTTTAGACGATGACGTGGAGCTGGAGTTGAAAGCAAGCGTGGCGGATGAAGCATTGAGCTTGTTACACAACCTTCACTTGTCCGAATCGGGTTTGAAGACTCTACTGAGTCACCCCGAGTTTCTAAACTCGTTAACCAAGGTTATGCAGCGAGGAATCTATGAGTCACGCGCCTACGCTGTTTTTCTACTGAGGTCGTTGTCGGAAGTGGCGGAACCGGTGCAGTTAAATAACCTGAAACCGGAACTGTTTGTCGAACTGGTTCAAGTCCTGAAGGACCAGATTTCGCACAAGGGTTCCAAGGCCACACTTCAGACGCTGATTCAGGTGTGTCCGTGGGGGAGGAACAGGGTGAAAGCGGTGGAGGCCGGGGCGGTGCCGGTTATCGTGGAGCTTCTTCTTGAATACAGGGAGAGGAAGCCCTGCGAGATGATGCTCGTTGTGTTGGAGATTCTGTGTCAGAGCGCGGACGGGCGCGCGGAGTTGCTGGCGCACGCGGCGGGAGTGGCGATCGTGGCGAAGAAGATTCTGAGGGTGTCGACGATGGCGAACGACAGGGCGACGAAGATTCTGTTGGCCGTGTGTAGATTCTCGGCGACGCCGAGCGTGTTGCAGGACATGATGCAGCTGGGGGTGGTTGCGAAACTGTGCTTGGTGCTGCAGGTGGATAGTGGGAACAAGGCGAAGGAAAAAGCCAAGGAGATTCTGAAACTGCACGCCAAAGCGTGGAAGAACTCGCCTTGCATACCTGTCCACTTGCTTGCTTCGTATCCAACCACTGCGTGA 1236 0.5566 MDEIDVPPFFLCPISLELMKDPVTVSTGITYDRHSIEKWLFASNNDTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASRGIQRIPTPKPPVDKTIIQNLLNDASGSPNLQLRCLRTLKSIASESQTNKRSIESAGAVKFLASVITNTVNSCLDDDVELELKASVADEALSLLHNLHLSESGLKTLLSHPEFLNSLTKVMQRGIYESRAYAVFLLRSLSEVAEPVQLNNLKPELFVELVQVLKDQISHKGSKATLQTLIQVCPWGRNRVKAVEAGAVPVIVELLLEYRERKPCEMMLVVLEILCQSADGRAELLAHAAGVAIVAKKILRVSTMANDRATKILLAVCRFSATPSVLQDMMQLGVVAKLCLVLQVDSGNKAKEKAKEILKLHAKAWKNSPCIPVHLLASYPTTA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0141 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Vra8g0141 411 PANTHER WDSAM1 PROTEIN 1 408 IPR045185 GO:0061630
Vra8g0141 411 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Vra8g0141 411 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Vra8g0141 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 408 - -
Vra8g0141 411 SUPERFAMILY ARM repeat 97 376 IPR016024 -
Vra8g0141 411 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Vra8g0141 411 SUPERFAMILY RING/U-box 3 77 - -
Vra8g0141 411 Gene3D - 92 400 IPR011989 -
Vra8g0141 411 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0141 Vra-Chr8 1597709 1599478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0141 2 408 U-box Gene Family AT2G35930 56.763 4.70e-171 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0141 - - gmx:100795263 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0141 8 1597709 1599478 Vra8g0141 8 1597709 1599478 ECH
Vra8g0141 8 1597709 1599478 Vra3g0608 3 6665314 6666902 PCT