Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0140 ATGGAGGAAATTGAAGTGCCTCAATACTTCATCTGCCCCATATCCCTCCAAATCATGAGGGACCCCGTTACGGCCATTACGGGCATAACTTACGACCGAGAAAGCATTGAACAATGGCTATTCAATAACAACAACACCACCTGCCCCGTTTCCAAACAACTCCTCCCTAGAGATTCTGATCTAACCCCTAACCATACCCTTCGACGCTTGATCCAAGCCTGGTGCACCCAAAACGCTTCACTTGGCATTCTTCGCATTCCAACTCCTAAACCTCCTCTCGACACACTTCAAGTCCTTAAACTCCTCAAACATCTCCATCATCACAAAACCTTCGTCCAGTTGGAACTCCTTGCCCTCGAGAACCACAGAAACAAAAAGTGCTTGCTTGAAGCAGAGGTCCCAAGGGCCATGATCATCTTCATCATCAATTGTTATACAATAAATCAAATCCAAAAGGGTCTCCAAGAAGCTCTTAGCATATTGCAGTTCGTCAAGATCCCCAAGAAGGATTGGCCGCTGCTCGTGAAGGACCACGACCAGATAATGGATTCTCTAACATGGATTCTGTGTCGTGAGGGAATGGAGAACTCCGTTGCAGTGAAATCCCATGCGCTGCTGCTGCTGAAGAAGATCATCAACAAGGGCAACACGTGTCACGTTCTGGAGAGACTGAAACCCGAATTCTTCGAAACAATGGTGAGGATTCTGAGACACGGAGTGACCCAACAAGGAATGAGTGCGGCACTTCACGTTCTGCTAAGCGCTTCTTCTTCGACGCGGAACAGGATCATGATGGTGGAAGCAGGTGTGGTTCACGAAGTGGTGGAGATCGAACTGGGGGCGCCGGAGAAGAGAGTGACGGAACTGACGCTGGCTATATTGTTCCACTTGTGTTGTTGCGCCAATGGGAGAGCCAAGTTTTTGAGCCACGAAGGGGCCATCGCGGTGGTGACGGAGAGGATTCTGAAGGTGTCTGCGGCGGTGGACGATAGGGCGGTGTTTGTATTGGCGATGGTGGCTAAGTTTTCGGGGACGAAGGTGGTTTTGCAGGAGATGTTGAAGGTGGGAAGCATGGCGAAGCTTTGCATGGTGCTTCAGGCTGATAGGGCAAAGTATTTGAAGGACAAAGCCATGGAAATTCTGAAGGAACATTCGGAGGTTTGGAGCGACTCGCCTTGCTTTCCTCGTTCGTCGTTTTGTGCCTACGTTCCCTACTGA 1218 0.4975 MEEIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFNNNNTTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNASLGILRIPTPKPPLDTLQVLKLLKHLHHHKTFVQLELLALENHRNKKCLLEAEVPRAMIIFIINCYTINQIQKGLQEALSILQFVKIPKKDWPLLVKDHDQIMDSLTWILCREGMENSVAVKSHALLLLKKIINKGNTCHVLERLKPEFFETMVRILRHGVTQQGMSAALHVLLSASSSTRNRIMMVEAGVVHEVVEIELGAPEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKVGSMAKLCMVLQADRAKYLKDKAMEILKEHSEVWSDSPCFPRSSFCAYVPY* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0140 405 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630
Vra8g0140 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 399 - -
Vra8g0140 405 SUPERFAMILY RING/U-box 3 79 - -
Vra8g0140 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 81 IPR013083 -
Vra8g0140 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vra8g0140 405 Gene3D - 94 387 IPR011989 -
Vra8g0140 405 SUPERFAMILY ARM repeat 115 371 IPR016024 -
Vra8g0140 405 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vra8g0140 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vra8g0140 405 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0140 Vra-Chr8 1581273 1583086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0140 2 394 U-box Gene Family AT3G11840 41.043 2.49e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0140 - - gmx:100798446 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0140 8 1581273 1583086 Vra8g0140 8 1581273 1583086 ECH
Vra3g0608 3 6665314 6666902 Vra8g0140 8 1581273 1583086 PCT