Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0139 ATGGCGACATATTTTCAAAGTAACCCCAAAATTCAAGCAGGTGCTGACGGCCTTCAAACTCTCGTACTAATGAACCCTGACTATGTCCAATACTCCGACGCGCCGCCGCCATCCCTCGGCGGAAACCACTTGTTTCTCAACTCCGCCACCACCGTTGCCAACAACTCCTCCCTACTGAATCTCCCTCACGCGCCGTCCCCTCACACTCAGCAATTCGTCGGCGTGCCACTCTCGGCAGCAACGCAGGAGCCGCCGCCGTCCATGCCCCATGACGTTTCCGCCCTGCATGGCTTCCTGCCACGCATGCAGTACAACCTTTGGAACACAATTGACCCCAGCACAGCGGCGCGTGATGCCACACGCGCTTCCCAGGGACTGTCACTTAGCCTTCACGGTGAGGAGGTGCGCCCAAGGTCATCCTCCGCCTCTGGGGCCTCCAACGGCGGCGGTATGGCGGGGATTCAGAGTGTTCTCTTGAGTTCCAAGTTCTTGAGGGTCACGCAAGAACTTCTGGACGAGGTTGTGAATGTTAACAGCGGAATTAAGGTTGAACAAGGGAAGCTGAGCTTGGAGAAAACTAAGGCGGTTGGAGAACCATCAACCGCTGCTAGTGGTGACGGCGGAGAGGGATGTGGGAAACGTAGCTCTGAACTGTCTACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGACGAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGACATCCTCCTTTGAGCAAGTTGCAGGGATTGGTTCTGCGAGGACGTACACAGCACTTGCATTGCAAACAATTTCAAAGCAATTTCGATGTTTGAAGGATGCTATAACAGGTCAAATCAGAGCTGCAAATAAGAGTTTGGGAGAAGAGGATTGTTTTGGGGCTAAAGTTGAAGGTTCTAGGCTCAAATACGTGGACCATCATCTACGCCAACAGAGAGCTATTCAACAGTTGGGTATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCTTACGTGCTTGGCTCTTTGAACACTTTCTCCACCCCTACCCCAAGGACTCCGACAAACACATGCTAGCAAAACAAACAGGGCTTACCAGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGAACAGGAACTAAATGGAAATGGGTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCCGCGATGAAACGAGAGAAACGTCCTACCTCTGAGATTGAATCAAAAGGTTCTGGTTCTAAAAAAGATGTTTCTAATTCAATAGTTTCAACTTCACCATCAACATCAGCACCTGTAGTGGGTAATGTGAAGAATCAATCAGGATTCAGTTTCATGGGGTCATCAGAGTTAGATGGAATCACACAAGGAAGCCCCAAGAAGGCAAGGAACCATGAAATCCTACTCTCTCCAAATCGTGCTTCTTCAATGAGCATGGATGTTAAAAGCAATGAAGGCAACAATGAGCAACAGCTTTCAATGGAGGAGAGACAGAGCAGAGATGGGTACTCTTTCATGGGGAGCCAAACAAACTTCACAAGTGGTTTTGGACAATACCCAATGGAGGAAATTGGTAGGTTTGATGCTGAACAATTCACACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACACATTGTCAGGAACACATCAAACCTTTCTCCCAAACCAGAACATTCAACTAGGAAGAGGGTTGGACATTGGTCAACCGAATCAGTTTGGTGTCTTGAACAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGGTACTGGACTTTGTCGCATAA 1953 0.4823 MATYFQSNPKIQAGADGLQTLVLMNPDYVQYSDAPPPSLGGNHLFLNSATTVANNSSLLNLPHAPSPHTQQFVGVPLSAATQEPPPSMPHDVSALHGFLPRMQYNLWNTIDPSTAARDATRASQGLSLSLHGEEVRPRSSSASGASNGGGMAGIQSVLLSSKFLRVTQELLDEVVNVNSGIKVEQGKLSLEKTKAVGEPSTAASGDGGEGCGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVTSSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGAKVEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEQELNGNGSEEKSSKSGEDPAMKREKRPTSEIESKGSGSKKDVSNSIVSTSPSTSAPVVGNVKNQSGFSFMGSSELDGITQGSPKKARNHEILLSPNRASSMSMDVKSNEGNNEQQLSMEERQSRDGYSFMGSQTNFTSGFGQYPMEEIGRFDAEQFTPRFSGNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRGLDIGQPNQFGVLNNSTSHSSAAFESINMQNPKRFAAQLVLDFVA* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0139 650 MobiDBLite consensus disorder prediction 134 149 - -
Vra8g0139 650 Pfam Associated with HOX 157 290 IPR006563 -
Vra8g0139 650 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 602 - -
Vra8g0139 650 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
Vra8g0139 650 MobiDBLite consensus disorder prediction 411 448 - -
Vra8g0139 650 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 1 8 602 - -
Vra8g0139 650 MobiDBLite consensus disorder prediction 193 223 - -
Vra8g0139 650 Gene3D - 342 419 - -
Vra8g0139 650 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677
Vra8g0139 650 SMART prehox3 152 291 IPR006563 -
Vra8g0139 650 MobiDBLite consensus disorder prediction 118 149 - -
Vra8g0139 650 CDD homeodomain 339 400 IPR001356 GO:0003677
Vra8g0139 650 Coils Coil 223 250 - -
Vra8g0139 650 SUPERFAMILY Homeodomain-like 340 405 IPR009057 -
Vra8g0139 650 MobiDBLite consensus disorder prediction 411 471 - -
Vra8g0139 650 MobiDBLite consensus disorder prediction 449 471 - -
Vra8g0139 650 SMART HOX_1 339 403 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0139 Vra-Chr8 1569656 1573801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0139 1 650 Homeobox Transcription Factor Family AT2G35940 48.977 1.93e-172 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra8g0139 POX 6.6e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0139 - - gmx:100810851 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0139 8 1569656 1573801 Vra8g0139 8 1569656 1573801 ECH
Vra3g0606 3 6636025 6640474 Vra8g0139 8 1569656 1573801 PCT