Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0136 ATGGCAGTGGCTCTGACATACTGTTTGCTGTTGCTCCTTTTCTCTCTGTGGACGGTGGTGTTAACCGAAACGGACCCGAACGATGTGGGGATTCTGAACAGTTTTCGAAGAGGTTTGAAGAACAAAGAGCTCTTACCGTGGCCGGAAGAAGGAGGAGACCCGTGTGGGAATCCGCCATGGAAGTACATATTCTGCAATGGCAACAGAGTTTCTCAGATTCAGACCAAGGACTTGGGTCTGGTGGGCCCGCTACCCTCCAACTTCAACAAGCTTTCAATGTTGGAGAATCTGGGTCTGCAGAACAACAACCTCACCGGACCCCTACCCTCCTTCAATGGCTTGTCAAACTTGAAGTACGCATTTCTCAACCGCAACGGGTTTGAATCCATTCCCGGAGATTTTTTCGGGGGGCTTCGGAGTCTGCAGGTGTTGGCTTTGGATTACAATAATCTCAATGCCTCTTCTGGTGGCTGGGTGCTTCCTCAAACTTTGGAAGATTCGGCGCAGTTGAGGAACTTTTCTTGCATGAGCTGCAACTTGGTGGGTCCCATTCCTGCGTTTCTCGGCTCTTTGGGTTCGCTGGAGGTGCTGCAGCTCTCCGGGAACAGCTTGACAGGGGAGATTCCGGGAGAATTGAACGCCGTTCCGGCGTTGCGGATTCTCTGGCTGAATAACCAGCGTGGCGACGGACTTACTGGGAAAATTGAAGTTGTTGCGAGCATGATTTCGTTGACGAGTTTGTGGCTTCACGGGAATAAGTTTAGCGGGAGTATTCCGATGAACATTGGAGATTTGGTCTCTCTGAGAGATTTGGATCTTAATGGGAATGAGTTTGTTGGATTGATTCCACGTGGTTTGAGTGGGATGAAGTTGGAGCGGTTGGATTTGAATAATAATCATTTTATGGGTCCGATCCCAGAGTTTGTAGCTGAGAAAGTGAGTTTTGAAAGTAATAATTTTTGTTTGTCGAAGCCTAAGACTATCTGTGCATTTGAAGTGATGGCACTGTTGGATTTTCTTGGAGGATTGGGTTATCTTCAGATTTTAGTTGATTCATGGAGTGGAAATAATCCGTGTGATGGGCCATGGCTGGGGATAAAGTGCAATGGTGATGGAAAGGTAGAAATGATTATTCTGAATAACTTTAACATTAGTGGTACTTTGAGTCCTTCTGTTGCCAAGTTAGATTCTCTTGTTGGAATAAGATTGGGAGGTAACGATATCAGTGGTAGGATACCCAGTAATTGGACTAGTTTGAGATCATTGACGTTGTTGGATCTGAGTGGTAATAACATTTCCCGTCCCTTGCCGAGTTTCGGGAAAGGGGTGAAGCTTGTGATTGATGGGAATTCTCAGTTACGTGGTCCCCCAGAAGTTTCTCTTTCTCCAACAGGTTCTGTTTCTGGTTCTGGTAAGGTTGAACCTCCTTCATCTCATAAGCATAATCCTAATCCATCCGAAGACTCTAGTCCCAATCCAAAGTCTGACAGTGTCTCTCTTGAGTCAAATAATTCCAGAAGGAAAAGCTTGGTTACACTTGTGGCTCCTATTGCAGGTGTTGCGGCTGCGGCTTTTGTTCTCATTCCGCTTTCTGTGTATTGTTTCAGGAAGAGAAACGGTGTCTCTGAGAAAGCAGGGTCTCAGGTGATTCACTCCAGAGATCCTTCTGATTCGAACAATTTGCTGAAGGTTGTAATTGCTAACGACGGTAATGGAAGTGTTTCCACAGTGACTGGCTCTGGGTCTGGGACTCTAAATGGAAGTGGGGAATCTCATGTCATTGAATCTGGGAACCTTGTGATATCGGTTCAGGTTCTTCGAAATGTGACCAAGAATTTTGCACGAGAGAATGAGCTTGGACGCGGTGGATTTGGAGTAGTTTACAAGGGAGAATTGGATGATGGGACTAAGATTGCGGTGAAAAGAATGGAATCGGGCGTTATTACCAGCAAGGCCTTGGATGAGTTCCAGTCTGAGATTGCAGTTCTATCGAAAGTCAGGCACCGGCATTTGGTATCTCTTTTGGGTTATTCAGTTGAAGGTAATGAGAGGATTCTGGTTTATGAGTATATGCCACAAGGGGCTCTCAGTATGCATCTGTTCCATTGGAAGAGCTCGCAACTGGAGCCACTTTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTCGCTAGAGGAATGGAGTATCTTCATAGCCTGGCACACCAGATCTTCATTCACAGAGATCTTAAATCATCAAATATTTTGCTTGGGGATGACTTTAGAGCAAAAGTCTCCGATTTTGGATTGGTAAAGCTTGCCCCTGATGGCAAAAAATCTGTAGTGACCAGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTCACCACCAAAGCAGATGTTTTCAGTTTCGGCGTTGTTCTAATGGAGCTGTTAACTGGATTAATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAGTACTTGGCATCGTGGTTCTGGCATGTAAAATCAGACAAGGAGAAACTAATGGCTGCTGTTGACCCTGCCCTTGACATAAAGGAAGAAATGTTCGATATTGTCTCCATCATTGCCGAGTTAGCTGGGCACTGCACTGCCAGAGAACCAAACCAAAGGCCAGATATGAGTCATGTTGTGAATGTTCTTGGACCGCTCGTTGAGAAATGGAAACCATTCGATGATGAGACTGAGGAGTATTCTGGCATCGACTATAGTCTTCCCCTTAACCAAATGGTAAAGGATTGGAAAGAGACAGAAGGGAAGGATTTGAGCTATGTTGACCTACAAGACAGTAAGAGCAGTATACCTGCAAGACCTACTGGGTTTGCAGAGTCTTTCACTTCTGTTGATGGCCGCTGA 2880 0.4576 MAVALTYCLLLLLFSLWTVVLTETDPNDVGILNSFRRGLKNKELLPWPEEGGDPCGNPPWKYIFCNGNRVSQIQTKDLGLVGPLPSNFNKLSMLENLGLQNNNLTGPLPSFNGLSNLKYAFLNRNGFESIPGDFFGGLRSLQVLALDYNNLNASSGGWVLPQTLEDSAQLRNFSCMSCNLVGPIPAFLGSLGSLEVLQLSGNSLTGEIPGELNAVPALRILWLNNQRGDGLTGKIEVVASMISLTSLWLHGNKFSGSIPMNIGDLVSLRDLDLNGNEFVGLIPRGLSGMKLERLDLNNNHFMGPIPEFVAEKVSFESNNFCLSKPKTICAFEVMALLDFLGGLGYLQILVDSWSGNNPCDGPWLGIKCNGDGKVEMIILNNFNISGTLSPSVAKLDSLVGIRLGGNDISGRIPSNWTSLRSLTLLDLSGNNISRPLPSFGKGVKLVIDGNSQLRGPPEVSLSPTGSVSGSGKVEPPSSHKHNPNPSEDSSPNPKSDSVSLESNNSRRKSLVTLVAPIAGVAAAAFVLIPLSVYCFRKRNGVSEKAGSQVIHSRDPSDSNNLLKVVIANDGNGSVSTVTGSGSGTLNGSGESHVIESGNLVISVQVLRNVTKNFARENELGRGGFGVVYKGELDDGTKIAVKRMESGVITSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSMHLFHWKSSQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEESQYLASWFWHVKSDKEKLMAAVDPALDIKEEMFDIVSIIAELAGHCTAREPNQRPDMSHVVNVLGPLVEKWKPFDDETEEYSGIDYSLPLNQMVKDWKETEGKDLSYVDLQDSKSSIPARPTGFAESFTSVDGR* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0136 959 Gene3D Ribonuclease Inhibitor 26 328 IPR032675 -
Vra8g0136 959 CDD STKc_IRAK 619 892 - -
Vra8g0136 959 Gene3D Transferase(Phosphotransferase) domain 1 691 909 - -
Vra8g0136 959 PANTHER OSJNBA0070M12.3 PROTEIN 7 959 - -
Vra8g0136 959 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 7 959 - -
Vra8g0136 959 Pfam Protein tyrosine and serine/threonine kinase 616 889 IPR001245 GO:0004672|GO:0006468
Vra8g0136 959 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vra8g0136 959 Pfam Leucine rich repeat N-terminal domain 335 369 IPR013210 -
Vra8g0136 959 SUPERFAMILY L domain-like 57 443 - -
Vra8g0136 959 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Vra8g0136 959 ProSiteProfiles Protein kinase domain profile. 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0136 959 SMART LRR_typ_2 138 167 IPR003591 -
Vra8g0136 959 SMART LRR_typ_2 265 288 IPR003591 -
Vra8g0136 959 SMART LRR_typ_2 114 137 IPR003591 -
Vra8g0136 959 SMART LRR_typ_2 419 442 IPR003591 -
Vra8g0136 959 SMART LRR_typ_2 191 215 IPR003591 -
Vra8g0136 959 Gene3D Ribonuclease Inhibitor 331 455 IPR032675 -
Vra8g0136 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Vra8g0136 959 SUPERFAMILY Protein kinase-like (PK-like) 591 889 IPR011009 -
Vra8g0136 959 MobiDBLite consensus disorder prediction 939 959 - -
Vra8g0136 959 Gene3D Phosphorylase Kinase; domain 1 582 690 - -
Vra8g0136 959 SMART serkin_6 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0136 959 MobiDBLite consensus disorder prediction 454 503 - -
Vra8g0136 959 MobiDBLite consensus disorder prediction 455 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0136 Vra-Chr8 1527901 1531889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0136 82 926 Receptor kinase-like Gene Family AT1G55610 29.989 4.08e-80 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vra8g0136 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0136 - - gmx:100781857 1536.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0136 8 1527901 1531889 Vra8g0136 8 1527901 1531889 ECH
Vra3g0603 3 6572561 6576166 Vra8g0136 8 1527901 1531889 PCT