Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0120 ATGTCCACCGCCGCCGGACCTCCCGACCGCCGTGCCTCGCCGCCGCGGGGGGCTGCCGGCACCACTGTCCGCCCCGCCCTCAAGCGCCACCTCGCTTTCGTCACTAAACCGCCCTTTGCTCCCCCGGACGACTACCACAGCTTCTCCTCCATCGACTCCCGCCGCCTTGCCGATGAAGCCGTTGTCGTTAGATCTCCATACATGAAGCGAAAGGGTGGAATGAATGACAGCGAAGGAGAGTCTCACACACAGAAGTGGAGTAACAGTCCTGGATACACTAATGTTAGTAACATAACGAATAGTCCCTTTAAAACTCCAGTGTCTGCAAAAGGAGGAAGGACACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCATGTCCTCCCACACCCATCTCAAATGCTGGTTCCCCGTCTCCTCTTACTCCTGCCAGCAGCTGCCGTTATGACAGTTCCTTAGGTCTCTTAACCAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGATCTAAATAAAGCAGCCGAGACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACGAATGTTTTAGAAGGCATTGGTCTCATTGAAAAGAAACTCAAAAATAGAATACATTGGAAGGGAATTGAATCTTCCACGTCTGGTGAGGTGGATGGCGATATATCTGTGCTTAAGGAAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGATTGAGAAAGCTGAGTGAAAATGAAAATAACCGGAAGTGCCTTTTCGTGACCGAGGATGACATTAAGAACCTACCTTGCTTCCAGAATGAAACTTTAATAGCAATTAAAGCTCCGCATGGAACTACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTAGACTATCCTCAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTCATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAACGGTGCTGAGCTCCCCATGATCCCACTTGCTTCCAGTTCTGAGTCCAACGAACAAGTAATGACAGAAATGGTTCCTGCCGAATGCAGCGGAAAAGAATTTGAACCTCAAACTCAGCTGTCTTCTCATGTATACTCCGATATAAATGCTTCGCAAGAGTTTGCTGGTGGCATGATGAAGATCGTCCCTTCAGATGTTGATAATGACGCTGATTATTGGCTTCTATCAGATGCTGACGTTAGTATAACAGATATGTGGAGAACAGATTCTACTGTTGATTGGAATGGGGTGGACATGCTTAATCCTGATTTTGGAATCATTTCGAGACCTCAAACTCCATCATCGGGGTTTGTGGAAGTGCCAACACCAGGAGCAAATTCTAATCATAAGTGA 1404 0.4623 MSTAAGPPDRRASPPRGAAGTTVRPALKRHLAFVTKPPFAPPDDYHSFSSIDSRRLADEAVVVRSPYMKRKGGMNDSEGESHTQKWSNSPGYTNVSNITNSPFKTPVSAKGGRTQKAKASKEGRSCPPTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKEEVEKLSLEEQGLDDQIREMQERLRKLSENENNRKCLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAELPMIPLASSSESNEQVMTEMVPAECSGKEFEPQTQLSSHVYSDINASQEFAGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSTVDWNGVDMLNPDFGIISRPQTPSSGFVEVPTPGANSNHK* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0120 467 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Vra8g0120 467 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Vra8g0120 467 MobiDBLite consensus disorder prediction 1 25 - -
Vra8g0120 467 Coils Coil 225 262 - -
Vra8g0120 467 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Vra8g0120 467 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Vra8g0120 467 PANTHER TRANSCRIPTION FACTOR E2F 25 447 IPR015633 GO:0000978|GO:0006357
Vra8g0120 467 CDD E2F_DD 225 329 IPR032198 GO:0046983
Vra8g0120 467 MobiDBLite consensus disorder prediction 79 108 - -
Vra8g0120 467 MobiDBLite consensus disorder prediction 68 142 - -
Vra8g0120 467 Gene3D - 141 214 IPR036388 -
Vra8g0120 467 MobiDBLite consensus disorder prediction 447 467 - -
Vra8g0120 467 PANTHER TRANSCRIPTION FACTOR E2FB 25 447 - -
Vra8g0120 467 MobiDBLite consensus disorder prediction 126 142 - -
Vra8g0120 467 Gene3D - 219 329 - -
Vra8g0120 467 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0120 Vra-Chr8 1309619 1314685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0120 21 457 E2F-DP Transcription Factor Family AT2G36010 55.889 1.10e-157 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vra8g0120 E2F_CC-MB 7.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0120 K06620 - gmx:100811762 850.892