Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0117 ATGTCAAGTTCAGCAAGAAAACTAACCTTCAACACTGTCTCCGTCAGCTTGGGCTGCGGCACCTGCAGAAGGCCCAAGCTTCTCCGTCACATATTCCACCCCAAACGTCGCCCCAAGAGGCCCACCTTCCGAGCCCAAACCCATCACTGGTCGCAAGACAGAGACGACACTACTACCACCGCCACCACCAGTACCACAACCACCACCACAACCTTCTCTCCGTGCCATGTCGACTCTTCCGCGCAGTTCTGCGACTACGCCAAGAGCGTGCGGGGGTTCGGCCGTGTGGGGAGCGAGGGCGTGGCGGTGGAAAAAGACTCCGACGACCCTTACCTGGACTTCCGACACTCCATGCTCCAGATGATACTCCAAAACGAGATTTACTCCAAAGACGATCTCAGAGAACTTCTCAACTGTTTCCTTCAGCTCAATTCACCGGACCACCACGGCGTCATCGTCAGAGCCTTCACCGAGATCTGGAACGGCGTTTTCTCCGTCAGCTCCGGCGCCACCGCGTTCCACCGCAACCGTAAGACTCGTGACTTTTAG 549 0.5683 MSSSARKLTFNTVSVSLGCGTCRRPKLLRHIFHPKRRPKRPTFRAQTHHWSQDRDDTTTTATTSTTTTTTTFSPCHVDSSAQFCDYAKSVRGFGRVGSEGVAVEKDSDDPYLDFRHSMLQMILQNEIYSKDDLRELLNCFLQLNSPDHHGVIVRAFTEIWNGVFSVSSGATAFHRNRKTRDF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0117 182 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 171 IPR038933 GO:0045892
Vra8g0117 182 PANTHER TRANSCRIPTION REPRESSOR OFP6-LIKE 1 171 - -
Vra8g0117 182 MobiDBLite consensus disorder prediction 34 68 - -
Vra8g0117 182 Pfam Transcriptional repressor, ovate 107 163 IPR006458 -
Vra8g0117 182 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 101 161 IPR006458 -
Vra8g0117 182 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vra8g0117 182 ProSiteProfiles OVATE domain profile. 103 162 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0117 Vra-Chr8 1292323 1293222 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vra8g0117 Ovate 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0117 - - pvu:PHAVU_007G269800g 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0117 8 1292323 1293222 Vra8g0117 8 1292323 1293222 ECH