Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0111 ATGAATTGCTCCATCTCCGGCGAAGTTCCGGAAGAGCCCGTCGTGTCTAGGAACTCTGGTCTTCTCTTCGAGAAGCGTTTGATTGAGCGACACATTTCGGATTATGGCAAGTGTCCAATTACTGGTGAACCACTTACTATGGATGACATTGTACCAATCAAGACAGGGAAGATAGTGAAGCCCAGACCTGTCCAGGCAGCTAGCATTCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGGCAAGAGCTGAGTCATGCTCTCTACCAGCATGATGCTGCATGCCGAGTGATTGCTAGACTTAAAAAGGAACGAGATGAAGCTAGGTCCTTACTTGCGCAAGCAGAAAGGCAGTACCCTGTTTCTGCACTAAATGCTCCAACTGCAAATGCCCCTGTTCTGAGCAATGGAAAAAGAGCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCGTAATTTCTGAGCTAACTGATTGCAATGCTGCTCTCTCCCAGCAGAGAAAGAAGAGACAGATTCCTGCCACTTTGGCTCCTATTGAAGCTCTAGAGTCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACAAGGCATTATATCCCTTGATATCCTTTATTCTAAGGACTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGACCTTCAGGACAGATATTATCTACACTAAGTGGTCACTCCAAAAAGGTGACCAGTGTAAAGTTTGTAGCTCAGGGTGAATCAATCTTAACTGGTTCAGCAGATAAGACAGTTCGTCTGTGGCAAGGGTCAGATGATGGTAACTATAACTGCAGGCACATCTTAAAGGATCATACAGCTGAGGTGCAAGCTGTCACTGTCCATGCTACCAATAATTATTTTGTGACTGCTTCACTTGATGGCTCTTGGTGCTTTTATGAACTTTCTTCAGGGACATGTTTGACTCAGGTTTTTGACTCTTCAGGTTCTTCTGAAGGCTACACATCAGCTGCTTTCCATCCTGATGGTCTCATCCTTGGAACTGGAACCACAGAATCTCTTGTTAAGATCTGGGATGTAAAAAGCCAGGCAAATGTTGCTAGGTTCGATGGACATGCTGGTCCAGTAACTGCCATTTCTTTTTCTGAGAACGGATACTTCCTTGCGACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGGAAATTGAAGAACTTTAGGAATTTTGCTCCATATGATTCGGAAACACCAACAAACTCTGTGGAGTTCGACCACAGTGGATCCTACCTTGCAATTGCTGGCTCGGATATAAGGATTTACCAAGTTGCAAATGTGAAATCTGAATGGAACTGCATTAAAACTTTCCCTGATTTATCCGGAACAGGTAAGGCCACGTGTGTAAAATTTGGTGCAGACTCTAAATACATAGCTGTTGGATCAATGGACCGGAATCTTCGAATATTTGGCTTGCCTGGCGAAGATGCTCCCAGTGAGTCATAA 1578 0.4385 MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQYPVSALNAPTANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSVISELTDCNAALSQQRKKRQIPATLAPIEALESYTQISSHPFHKTNKQGIISLDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESILTGSADKTVRLWQGSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVFDSSGSSEGYTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYLAIAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGADSKYIAVGSMDRNLRIFGLPGEDAPSES* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0111 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Vra8g0111 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Vra8g0111 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Vra8g0111 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 387 - -
Vra8g0111 525 Coils Coil 115 135 - -
Vra8g0111 525 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Vra8g0111 525 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Vra8g0111 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 393 IPR001680 GO:0005515
Vra8g0111 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Vra8g0111 525 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 525 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Vra8g0111 525 SUPERFAMILY RING/U-box 1 53 - -
Vra8g0111 525 CDD WD40 226 514 - -
Vra8g0111 525 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Vra8g0111 525 Pfam WD domain, G-beta repeat 390 425 IPR001680 GO:0005515
Vra8g0111 525 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Vra8g0111 525 Pfam WD domain, G-beta repeat 475 514 IPR001680 GO:0005515
Vra8g0111 525 Gene3D - 201 516 IPR015943 GO:0005515
Vra8g0111 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Vra8g0111 525 SMART WD40_4 428 467 IPR001680 GO:0005515
Vra8g0111 525 SMART WD40_4 255 294 IPR001680 GO:0005515
Vra8g0111 525 SMART WD40_4 474 515 IPR001680 GO:0005515
Vra8g0111 525 SMART WD40_4 210 252 IPR001680 GO:0005515
Vra8g0111 525 SMART WD40_4 300 339 IPR001680 GO:0005515
Vra8g0111 525 SMART WD40_4 387 425 IPR001680 GO:0005515
Vra8g0111 525 SMART WD40_4 343 384 IPR001680 GO:0005515
Vra8g0111 525 CDD RING-Ubox_PRP19 3 54 - -
Vra8g0111 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 434 IPR001680 GO:0005515
Vra8g0111 525 SUPERFAMILY WD40 repeat-like 221 514 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0111 Vra-Chr8 1197471 1205654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0111 1 525 U-box Gene Family AT1G04510 75.048 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0111 K10599 - gmx:100527039 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0111 8 1197471 1205654 Vra8g0111 8 1197471 1205654 ECH