Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0109 ATGTTGCAGGATGTTATCCAACCCCCAACACCAGATGAGCAACATCTCCCCATTGATGAGATTTCAAGTCCAATCAGTGCTCGATATTTCGAACTTTGTGACCCTGATTTTTTCCAAGACACACTGCAAAATTCTGAGGTTACCTCCAGCTCAAATTGTTGCCATGAAGACAAGTCCTCATATGCCACAACGATATCTCCACCTATAGATGCAGCAGACAACAAGATCAATATCAATATCAATAGCAACATAGTCACCACCTCATCTAGTACTACCACAGCCAGCACCACTACCAACAACAATAACAACAACCTCAACAACACAACAAACAGCAATAACCTGTCTCTCTTCTTTGACTCTCCAGATGATCCTGACAATGACATATCAGCCTCCATAAACTTCTCACCATCTCCTTCTTTTGTTGTTCCACCACTTCTCCCAATCACAACTCAGCAGGATCATTTTGATTTCTCTTCAGCTCAGCAACAGCTGCATCTATCAGCGTCAGGTTCAGTTTTGAAGGGCCTCTCTCAGTACCCTACTGATCCTGTGGTTGCACCCCTTATTGGTGCTCCATTAGCCTCAGTTTTTGATGATGATTGCATCTCTTCCATCCCTTCTTATGTGCCTCTCAACCCTTCATCTCCCTCTTGCTCTTATCTCAGTCCTGGCATAGCAGCCTACATGCCTCCTCCTGGTTCCCTTACCACTGCGTTATCTGCTGACAGTTCTGGATTGTTTGGTGGGAACATTCTACTTGGGTCTGAACTGCAGGCACAAGAATTGGACTACCAGGGAGAAAATGGTGGAATATATTGTACAGATTCAATTCAGAGGGTGTTTAACCCCCCAGAACTTCAGGCACTTGGTAATGAGAGTCAGAAACTGGTATCTGCTGGGGGCTCTAGCACTTTGGCACCAGAAATTTCACACTTGGAGGACTCTACCTTGAAGGTTGGAAAACTTTCTGTTGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAACTTCAGCAAGAAAATCAAGTACGCTTGCCGCAAAACTTTGGCAGATAGCAGGCCACGGGTCAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATAGCCATAGACAAGGAAGTAGCAACCATGAAGAAGATGATGAAGAGATAATTGTGAAAGAAGATGATGATTTGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGGGTGAACTCTTTCAAATGCAACTATTCCATTCAGTCCTTGATTTGA 1275 0.4353 MLQDVIQPPTPDEQHLPIDEISSPISARYFELCDPDFFQDTLQNSEVTSSSNCCHEDKSSYATTISPPIDAADNKINININSNIVTTSSSTTTASTTTNNNNNNLNNTTNSNNLSLFFDSPDDPDNDISASINFSPSPSFVVPPLLPITTQQDHFDFSSAQQQLHLSASGSVLKGLSQYPTDPVVAPLIGAPLASVFDDDCISSIPSYVPLNPSSPSCSYLSPGIAAYMPPPGSLTTALSADSSGLFGGNILLGSELQAQELDYQGENGGIYCTDSIQRVFNPPELQALGNESQKLVSAGGSSTLAPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDSHRQGSSNHEEDDEEIIVKEDDDLVDSSDIFAHISGVNSFKCNYSIQSLI* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0109 424 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 18 424 - -
Vra8g0109 424 MobiDBLite consensus disorder prediction 363 389 - -
Vra8g0109 424 ProSiteProfiles CCT domain profile. 327 369 IPR010402 GO:0005515
Vra8g0109 424 MobiDBLite consensus disorder prediction 88 108 - -
Vra8g0109 424 MobiDBLite consensus disorder prediction 363 387 - -
Vra8g0109 424 Pfam CCT motif 327 369 IPR010402 GO:0005515
Vra8g0109 424 PANTHER CCT MOTIF FAMILY PROTEIN 18 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0109 Vra-Chr8 1171019 1175718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0109 327 385 C2C2-CO-like Transcription Factor Family AT5G57660 46.875 1.34e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra8g0109 CCT 5.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0109 - - gmx:100793417 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0109 8 1171019 1175718 Vra8g0109 8 1171019 1175718 ECH