Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0097 ATGTTGAAGTCAGTGTCATTTGGAGTGTTGTTAACTTGGTTTGTGGTGGTGACGTGTGTGTGTGGAGCAGATGTTCAAAGATGTAACTGTGATGATGAGTGGAGCTTCTGGACTATTGATACCATTCTGGAGTGCCAAAGGGTTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCTGTTGAGCTGCTTTACTTTGTTAGTTGCTCAAATCTCCCATTCAAATGGGTCCTCTTTGAGTTCATTGCTTTCATTGTACTTTGTGGGATGACACATTTGCTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTAATGGTGGCAATCACTGTGTTCAAAACTCTCACTGCCTTGGTTTCATGTGCCACTGCTCTAACTCTCCTCACTCTGATCCCTCTGCTGTTGAAAGTGAAGGTTAGGGAGTTCATGCTGAAGAAAAAGACCTGGGATCTTGGCAGGGAGGTTGGCTTTATAATGAAACAGAAGGAGGCTTCGGTGCATGTAAGAATGCTTACTCAAGAGATTCGAAAGTCCTTGGATAGGCACAAGATTCTGTACACCACCTTGGTTGAACTGTCCAAGACACTTGGTTTGCAAAACTGTGCAATTTGGATGCCAAATGATGAGAAAACTGAGATGAACCTTACTCATGAATTGAATGGGAGGAATGCCAACTGTTCTATTCTCATAACTGATCCTGATGTTGCCAGAATCGAGGGGAGTGATGAAGTAAACGTGATTGATTCTGATTCAGTGCTTGCCACTGCCAGCAGTGGAGATTCTGGTGTGGCAGGACCAGTTGCTGCAATCCGAATGCCAATGCTTCGGGTTAGCAATTTCAAAGGGGGAACGCCGGAGCTAAGGCAGACATGTTATGCCGTATTGGTTTTGATTCTCCCTGTCACGGAGGCTAAATCATGGAGCACTCAAGAGCTGGAGATCATCAAGGTGGTTGCTGATCAGGTGGCGGTGGCTCTGTCTCATGCTGCAATTCTTGAAGAGTCTCATATGATGAGGGGGAAGTTGGAGGAACAAAATCGAGCATTGCAAGTGGAAAAGATTAATGCTATGAAGGCCAACCAGGCCAGAGCAGCATTTCAGAAAGTCATGAGTAATGGAATGGGAAGGCCTATGCACTCAATCTTGGGGCTGCTTTCAGTGATGCAGGAAGAGAATTTAAAGCGTGAACAGAAAGTCGTTGTGGATTCTATGTTCAGAACCAGCACTGTGATGTCAAACCTGCTGAATGATGCCATGGACTGGTCATCAAGGGATGATGGAAGATTCCCTTTGGAGATGAAGCCTTTTGGACTGCATGATATGGTGAAGGATGCAGCTTGCTTTGCCAGGTTCATGTGTGTTTATAGGGGCCTTGGCTTTGTTATTGATGCTGATAAGTCTTTGCCAGACAATGTTATAGGTGATGAAAAGAGGGTCTTCCAAGTGCTTCTGCATATGGTTGGGAGTGCAATAAATGGTAACCGAGGAGGAGGGGTTCTTGTGCTCCGAGTTTATGCAGAAACTGGAAGTCAAGGGAGGAGTGACCAGGGTTGGACAAATTGGAGACCAAGCTCTTCAAATGGGGATGTAAATATCAGATTTGAGATAGGGATCAAAACTGGTGATTCTGAAATGGACAATCCAGTTCCTTCAGGGCACCTTCCTGGTACAATGCATGCTACTGATTCGGTTGAGCAAAGGTTGTGCTTCAGCATTTGCAAGAGGATAATTCAGTTGATGCAAGGAAACATATGGTTTGTACCAAACGGTGAAGGTGATCCTCAGGTGATGGCGATTACTCTACGGTTTCAACAGCAGCGATCTGTTGTTGGTGTGTCAATGAGTGAAACTGGGGAAAGTTCTGAGGCGTCAAATTCGAACTCTTTTTTCAGAGGACTGCAAGTGTTGTTGGTGGAGAAGGATGATGTAAATAGAGCAGTGACTCAGAAGTTGCTGCAGAAACTAGGGTGCTCTGTGACTTGTGTATGTTCAGGATTTGAATGTCTGAGTGTGATTGGAGGTGGTGGATGCTCCTTTCAAGTGATTGTTTTGGATGTACAGATGCCTGAGCTTGATGGGTTTGAAGTTGCATCAAGGATTCGCAAGTTCGGCAGCAGAAACTGGCCGGTGATTGTGGCCTTGACTGCAAGCACAGAAGATTTCTGGGAAAAATGCATGCAAGTTGGCATCAATGGAGTCATAAGAAAACCACTTTTGTTGCATGGAATTGCCGCTGAACTCAGAAGAATCCTGTTGCAGGGAAATACTGTCATGTGA 2283 0.4525 MLKSVSFGVLLTWFVVVTCVCGADVQRCNCDDEWSFWTIDTILECQRVGDFLIAVAYFSIPVELLYFVSCSNLPFKWVLFEFIAFIVLCGMTHLLNGWTYGPHTFQLMVAITVFKTLTALVSCATALTLLTLIPLLLKVKVREFMLKKKTWDLGREVGFIMKQKEASVHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAIWMPNDEKTEMNLTHELNGRNANCSILITDPDVARIEGSDEVNVIDSDSVLATASSGDSGVAGPVAAIRMPMLRVSNFKGGTPELRQTCYAVLVLILPVTEAKSWSTQELEIIKVVADQVAVALSHAAILEESHMMRGKLEEQNRALQVEKINAMKANQARAAFQKVMSNGMGRPMHSILGLLSVMQEENLKREQKVVVDSMFRTSTVMSNLLNDAMDWSSRDDGRFPLEMKPFGLHDMVKDAACFARFMCVYRGLGFVIDADKSLPDNVIGDEKRVFQVLLHMVGSAINGNRGGGVLVLRVYAETGSQGRSDQGWTNWRPSSSNGDVNIRFEIGIKTGDSEMDNPVPSGHLPGTMHATDSVEQRLCFSICKRIIQLMQGNIWFVPNGEGDPQVMAITLRFQQQRSVVGVSMSETGESSEASNSNSFFRGLQVLLVEKDDVNRAVTQKLLQKLGCSVTCVCSGFECLSVIGGGGCSFQVIVLDVQMPELDGFEVASRIRKFGSRNWPVIVALTASTEDFWEKCMQVGINGVIRKPLLLHGIAAELRRILLQGNTVM* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0097 760 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vra8g0097 760 PANTHER ETHYLENE RESPONSE SENSOR 2 11 757 - -
Vra8g0097 760 PIRSF Ethylen_sen_hybr_HK 1 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vra8g0097 760 CDD REC_ETR-like 635 749 - -
Vra8g0097 760 Gene3D - 428 549 IPR036890 -
Vra8g0097 760 Gene3D - 330 427 - -
Vra8g0097 760 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 353 430 IPR036097 GO:0000155|GO:0007165
Vra8g0097 760 CDD HATPase_ETR2_ERS2-EIN4-like 470 603 - -
Vra8g0097 760 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Vra8g0097 760 SUPERFAMILY GAF domain-like 185 331 - -
Vra8g0097 760 SMART REC_2 635 749 IPR001789 GO:0000160
Vra8g0097 760 ProSiteProfiles Response regulatory domain profile. 636 753 IPR001789 GO:0000160
Vra8g0097 760 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 509 IPR036890 -
Vra8g0097 760 Gene3D - 162 329 IPR029016 -
Vra8g0097 760 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 11 757 - -
Vra8g0097 760 Gene3D - 615 752 - -
Vra8g0097 760 Pfam Response regulator receiver domain 637 740 IPR001789 GO:0000160
Vra8g0097 760 SUPERFAMILY CheY-like 632 753 IPR011006 -
Vra8g0097 760 SMART gaf_1 182 338 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0097 Vra-Chr8 1031509 1035564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0097 24 753 Miscellaneous Gene Families AT3G04580 54.032 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra8g0097 GAF 2.2e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0097 K14509 - gmx:100802948 1181.39