Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0096 ATGGACCTTTCCATCAACGAGAGAAGCTTCGGCAGAGAAAGAGAAAGAGAAGATGAAGAGGAAGAAGATAGAGACAACGGCGATGAACCCAAAGAGGGTGCTGTCGAGGTTGGAACTCGCAGGCCCAGAGGGAGACCACCGGGCTCCAAGAACAAGCCCAAACCACCAATCTTTGTCACCAGGGACAGCCCAAACTCCCTCAGAAGCCATGTCATGGAGGTTGCCGGTGGCGCAGACGTCGCCGAAAGCGTCGCCCAGTTCGCTCGCCGCCGCCAGCGTGGGGTGTGTGTCCTCAGTGGGAGCGGTTCTGTTGCCAACGTCACTCTCCGGCAACCGGCAGCGCCGGGAGCGGTTGTCGCACTGCATGGAAGGTTTGAGATTTTATCCCTAAGCGGAGCGTTTCTGCCTGGCCCTGCTCCGCCAGGTGCCACCGGACTCACTGTGTATCTGGCCGGAGGACAGGGCCAGGTTGTAGGAGGAAGCGTTGTTGGTCCTCTTGTGGCAGCTGGACCAGTGATGATTATAGCTGCAACTTTTGCTAATGCTACATATGAGAGGTTGCCACTTGAAGAGGAGGATGAAGATGGTGGCGGTGGTGGCAGTGTCCAAGGAGGAAGTACTCTGGGAGGGTCTCCTCCTGGAATCGGTAGCAGTGGCGGTGGTGGTGGTGGTGACGGTGTGAGTGGTGGAAGCCACTTGCCCGGTGGGATTCCCGATCCTTCTTCTTTGCCTTTGTATAACCTTCCACCAAACCTTCTATCCAATGGAGGAGGCCAAGTGGGGCATGAGGCTTATGCTTGGGCACATGGCCATGGAAGACCACCTTTCTGA 831 0.5692 MDLSINERSFGREREREDEEEEDRDNGDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLSGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGPLVAAGPVMIIAATFANATYERLPLEEEDEDGGGGGSVQGGSTLGGSPPGIGSSGGGGGGDGVSGGSHLPGGIPDPSSLPLYNLPPNLLSNGGGQVGHEAYAWAHGHGRPPF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0096 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 275 IPR014476 GO:0003680
Vra8g0096 276 PIRSF ESCAROLA 3 276 IPR014476 GO:0003680
Vra8g0096 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 180 IPR005175 -
Vra8g0096 276 Gene3D - 67 195 - -
Vra8g0096 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 4 275 - -
Vra8g0096 276 ProSiteProfiles PPC domain profile profile. 64 203 IPR005175 -
Vra8g0096 276 MobiDBLite consensus disorder prediction 1 65 - -
Vra8g0096 276 MobiDBLite consensus disorder prediction 1 17 - -
Vra8g0096 276 MobiDBLite consensus disorder prediction 190 260 - -
Vra8g0096 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 64 193 - -
Vra8g0096 276 CDD DUF296 68 151 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0096 Vra-Chr8 1014216 1016231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0096 30 276 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 67.871 4.05e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0096 - - gmx:102663643 334.339