Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0088 ATGGATTCCTTAGGTGACAGCAGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGCCCAATCACAGTTTGAGCACTGAAATTGAAATTCCAGATGATGCTGTTGCTTGTGAAGAGAACACCAAGAAGAGGGGGCGTACTGATTCATGCTGTAAGGCGGGATCAAAAGCATGCCGTGAGAAATTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACCTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAGAACAGATAAACCATCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAGACCGAAGCTCAGGAACTCAAAACAAAAAACGAAAAATTATTAGAGGAAATAAAATGTTTGAAGGCCGAGAAAAACGAACTTCGTGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAGAGGATTGAGAAGCAGTTGAAATCTTTGGCCATTGCTCCAGCAGGGTTTATGGCACCCCCTGTAGCAGCTGCTGCTGCTGCTGCTTATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTACATTCCAATGTGGCAATATCTTCCTCAATCTGCCAGAGATACATCCCAAGATCATGAGCTTAGGCCTCCTGCTGCATAG 660 0.45 MDSLGDSSCWDFLDYSFIDQAPPDFLWPNHSLSTEIEIPDDAVACEENTKKRGRTDSCCKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPSILDDAIRVLSQLKTEAQELKTKNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKSLAIAPAGFMAPPVAAAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0088 219 Gene3D - 62 143 IPR036638 GO:0046983
Vra8g0088 219 CDD bHLH_AtILR3_like 64 139 - -
Vra8g0088 219 Pfam Helix-loop-helix DNA-binding domain 63 110 IPR011598 GO:0046983
Vra8g0088 219 PANTHER TRANSCRIPTION FACTOR BHLH104 1 219 - -
Vra8g0088 219 PANTHER BHLH TRANSCRIPTION FACTOR 1 219 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Vra8g0088 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 110 IPR011598 GO:0046983
Vra8g0088 219 SMART finulus 65 116 IPR011598 GO:0046983
Vra8g0088 219 Coils Coil 100 155 - -
Vra8g0088 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 137 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0088 Vra-Chr8 935705 939278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0088 49 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 66.860 1.03e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g0088 HLH 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0088 - - gmx:100787583 355.525