Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0087 ATGGATTTTGTGAGCCAAAGACACCTACTTCATTTTCCAACACAAGCTGATTCACCTTGCACAGTTCCTCCAAATCATGATATTCCACATCCTTCTGGTTCAAATCTTCCCCTCTTAGCAATCCTTGTGGTAGGAATGATGTTCACAACTTTCTTCCTTATAGGCTACTACATGTTAGTTGTCAAGTGCTGCTTCAATTGGCCCCATGTTAATCACACAAGACTATTTTCTCTGTCCAGACAAGGTGAAGAAGATCCATCTGCTGGATTCTCAGCAGCATCCGAGCCAAGAGGGCTAGAGGAAGCAGTTATCAGGTTAATCCCTGTGATTCATTATAAGCCAGAAAAAGGGGATACAAACTTTGGTGAAAGAAGCAACCTTGATGATTGTGCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAACACTCATTGCCCTCTCTGCAGAAGAATTGTGTCCTTGACAAGCCAGGTCCATGTTCACCAACCAAACCTTCTCACTCCAAGGTTTTCATCTCAAGACCAAAGCCAAAACATTGAAAGCAATGTCAGTGATGAAGGTTTTGTTGTGATTGATTTGGATGGTGAACATGATAGAGACCAAATCCTGGAAGGAAGACAAGATTTGCCTACCATTGCTGTTTCTTCACAGAAGAATGCAAAGAAGCTTCATAAAGTGATCAGCTTGGGAGATGAGTGTATTGGCATCAGAGCCAAAGGTGAAAGCTTTTCATCAGTTCAAGCCATGAGGAGGTCCTTTTCCATGGATTCATCAGTGGATAGAAAGTTTTATGGGGCAATTCAGCAGGTTTTACAGCAACAACAAGAACATGAACATGTTCATGAGATTAACACAGTTGAATCCTGTGGTGGCAGTGACAGAGTGAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAATGCTGTACAACCTGTTGATTTGGAGCCATGA 1029 0.4179 MDFVSQRHLLHFPTQADSPCTVPPNHDIPHPSGSNLPLLAILVVGMMFTTFFLIGYYMLVVKCCFNWPHVNHTRLFSLSRQGEEDPSAGFSAASEPRGLEEAVIRLIPVIHYKPEKGDTNFGERSNLDDCAVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNTHCPLCRRIVSLTSQVHVHQPNLLTPRFSSQDQSQNIESNVSDEGFVVIDLDGEHDRDQILEGRQDLPTIAVSSQKNAKKLHKVISLGDECIGIRAKGESFSSVQAMRRSFSMDSSVDRKFYGAIQQVLQQQQEHEHVHEINTVESCGGSDRVKRSFFSFGHGSRSRNAVQPVDLEP* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0087 342 PANTHER RING-H2 FINGER PROTEIN ATL16 23 341 IPR044600 GO:0016567|GO:0016740
Vra8g0087 342 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Vra8g0087 342 SMART ring_2 130 171 IPR001841 -
Vra8g0087 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 176 IPR013083 -
Vra8g0087 342 Pfam Ring finger domain 128 172 IPR001841 -
Vra8g0087 342 PANTHER RING-H2 FINGER PROTEIN ATL16 23 341 - -
Vra8g0087 342 CDD RING-H2_PA-TM-RING 129 172 - -
Vra8g0087 342 SUPERFAMILY RING/U-box 113 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0087 Vra-Chr8 931570 933127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0087 32 342 C3H Transcription Factor Family AT1G04360 38.177 5.84e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0087 - - gmx:100812364 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0177 3 2052786 2053875 Vra8g0087 8 931570 933127 PCT