Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0086 ATGGAAGAAGAAAGTTCAAAGGGAAAAGCGAAGGATGAAGAAGAGCATGTAAAGTACAGAGGAGTACGTAGAAGGCCATGGGGAAAATATGCAGCAGAGATTCGTGACTCAATGAAACATGGTCAAAGGTTGTGGTTGGGAACATTCACCACAGCAGAGGATGCTGCTAGAGCCTATGACAGAGCTGCATATGCCATGAGAGGTCCCTTTGCCGTCCTCAATTTTCCCAATGAATATCCTCCTCCACCAGCATCATCACATGTTCCTTCCTCGTCTTCTTCCTCTTCTTCTTCTGTGTCCATTTCAAGTCATGAACACGTGGAAAGAAGAGGAAGGAGAAAAGAAAAAAATGAGGATGAAAATGAAGTGTTTGAGTTTGAGTACTTTGATGACAAATTGTTGGAGGAGCTTCTTGGTTATGATGAAGACAAAAATAAGCATGGCAAGTGA 450 0.4267 MEEESSKGKAKDEEEHVKYRGVRRRPWGKYAAEIRDSMKHGQRLWLGTFTTAEDAARAYDRAAYAMRGPFAVLNFPNEYPPPPASSHVPSSSSSSSSSVSISSHEHVERRGRRKEKNEDENEVFEFEYFDDKLLEELLGYDEDKNKHGK* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0086 149 PANTHER ETHYLENE RESPONSE FACTOR 4 142 - -
Vra8g0086 149 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Vra8g0086 149 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vra8g0086 149 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vra8g0086 149 MobiDBLite consensus disorder prediction 72 121 - -
Vra8g0086 149 MobiDBLite consensus disorder prediction 103 121 - -
Vra8g0086 149 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vra8g0086 149 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vra8g0086 149 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vra8g0086 149 MobiDBLite consensus disorder prediction 88 102 - -
Vra8g0086 149 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vra8g0086 149 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vra8g0086 149 PANTHER DNA-BINDING DOMAIN 4 142 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0086 Vra-Chr8 923296 924213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0086 13 144 AP2-EREBP Transcription Factor Family AT3G23230 57.895 4.64e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g0086 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0086 - - gmx:100781117 164.466