Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0085 ATGGAGAAGATGGAAAGCGAAGAGCATAAGGAGTTGAAGGAGACAAAGGCAGCAGAAAAAGTCAGGTACCGTGGCGTCCGACGGCGGCCGTGGGGGAAGTATGCGGCGGAGATCAGAGACCCTTCTAAGCAAGGTTCAAGGTTGTGGTTGGGAACCTTTGAGAGTGCAGAAGAGGCAGCTAGGGCATATGATCATGCAGCTTTTGCCATAAGGGGTCGTGTTGCAATTTTGAATTTTCCTAATGAGTACCGTTCTCATGTTAGGGTTTATCCTCAAAATATACCATCACCATCGTCGTCGTCATCATCATCCATTACTCATGCAAATGGTGGACAGCAAAGACAGGTTTTTGAGTTTGAGTATTTGGATGATAAGGTGTTGGAGGAGCTTCTTCAGTTTGAAGAGAAGAATAACAAAGAAAGTTGA 426 0.4554 MEKMESEEHKELKETKAAEKVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFESAEEAARAYDHAAFAIRGRVAILNFPNEYRSHVRVYPQNIPSPSSSSSSSITHANGGQQRQVFEFEYLDDKVLEELLQFEEKNNKES* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0085 141 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Vra8g0085 141 PANTHER ETHYLENE RESPONSE FACTOR 8 135 - -
Vra8g0085 141 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Vra8g0085 141 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Vra8g0085 141 PANTHER DNA-BINDING DOMAIN 8 135 IPR044808 GO:0003700|GO:0009873
Vra8g0085 141 MobiDBLite consensus disorder prediction 92 111 - -
Vra8g0085 141 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Vra8g0085 141 Gene3D AP2/ERF domain 21 82 IPR036955 GO:0003700|GO:0006355
Vra8g0085 141 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vra8g0085 141 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Vra8g0085 141 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0085 Vra-Chr8 917072 917497 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0085 19 136 AP2-EREBP Transcription Factor Family AT3G23230 65.574 2.03e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g0085 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0085 - - gmx:100814296 195.667