Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0083 ATGGATTCTTCTTCCATTCTCTATTCATCAAACTCTTCAGAATCCTCAATGGGATCCCCTCATCACCATCTCCCTTTCAATGAAAACGATCCCGAAGAGATGCTTCTCTATGGCATGATCACATCATATCAAGAGCAAAACAACTCATGCAAACTCATCATCAAAGAAGAAGAGGTGAATTCAAAACAACACAAAAGTAGTAATAGTAACAACAACAATGGTAAGAGTTTTCGAGGTGTGCGGAGACGACCATGGGGAAAGTTCGCGGCAGAGATAAGAGATTCTACTCGGCATGGTATAAGGGTATGGCTTGGAACATTCGACAACGCCGAGGCTGCGGCGTTGGCATATGATCAAGCCGCCTTTGTCATGCGAGGCTCTGCTGCGATACTTAACTTTCCCGTAGAGAAAGTGAGAGAGTCATTGAGAGATATAGATTGCTCACCCTCTCAGCTTGAAGGTTGCTCTCCTGTCGTGGCCTTGAAGAGAAAACATTCATTGGGACGCAAAATGACTGCAAAAAAGAAGAAGGAAGAGACACAAGAGAGTGATAATATTATGTTAGAGAACATAGTTGTGTTGGAAGACTTGGGAGAAGAGTATTTGGAACAATTGTTAATGATGTCTTCTAGTGATACTAGATGTATTTGGTGA 654 0.4235 MDSSSILYSSNSSESSMGSPHHHLPFNENDPEEMLLYGMITSYQEQNNSCKLIIKEEEVNSKQHKSSNSNNNNGKSFRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDNAEAAALAYDQAAFVMRGSAAILNFPVEKVRESLRDIDCSPSQLEGCSPVVALKRKHSLGRKMTAKKKKEETQESDNIMLENIVVLEDLGEEYLEQLLMMSSSDTRCIW* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0083 217 CDD AP2 75 135 IPR001471 GO:0003700|GO:0006355
Vra8g0083 217 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Vra8g0083 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 16 208 - -
Vra8g0083 217 Pfam AP2 domain 77 126 IPR001471 GO:0003700|GO:0006355
Vra8g0083 217 Gene3D AP2/ERF domain 75 136 IPR036955 GO:0003700|GO:0006355
Vra8g0083 217 MobiDBLite consensus disorder prediction 1 22 - -
Vra8g0083 217 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Vra8g0083 217 MobiDBLite consensus disorder prediction 1 28 - -
Vra8g0083 217 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Vra8g0083 217 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Vra8g0083 217 PANTHER DNA-BINDING DOMAIN 16 208 IPR044808 GO:0003700|GO:0009873
Vra8g0083 217 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Vra8g0083 217 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0083 Vra-Chr8 900907 901581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0083 24 217 AP2-EREBP Transcription Factor Family AT3G23240 58.081 9.87e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g0083 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0083 K14516 - gmx:100780576 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0179 3 2067468 2068198 Vra8g0083 8 900907 901581 PCT