Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0079 ATGGTTAGAGCTCCTTGCTGTGAAAAGATGGGATTGAAAAAGGGTCCTTGGACTCAAGACGAAGATCAAATCCTCATATCATACATCCAAAAACATGGCCATGGAAACTGGCGTGCGCTTCCAAAGCTTGCAGGGCTATTGAGGTGTGGAAAGAGTTGCAGACTGAGATGGATTAACTACTTAAAACCTGATATCAAAAGAGGAAATTTCTCGAGTGAAGAAGAAGAGATTATCATCAAGATGCATGAGTTGCTGGGAAATAGGTGGTCAGCAATAGCAGCAAAACTACCAGGAAGAACAGACAATGAAATTAAGAATGTGTGGCACACTCATTTGAAGAAGAAGTTGGTGAATTCAGATAGCAAAAGGGTTGTTTCGAATCAAAAAATAAAACGATCTGATTCTAATTCCAGCACCCTAACATCATCATCGGCATGTACTTCTTCCAGTGATTTTTCATCATTCAGTGAAGGGAACAAAAACATGAACAACAAGAACAGCATGATCAAGAGTGAAGACACAGAGTCTGAGGAGACAACAATGCCTCCAATTGATGAAAGCTTTTGGTCAGAGGCAACAGTTGAAGATGAAAGCTCCACCATGATGATGCCATCATCAAATTCTTGGACAATTTCCAATGAACCACAATTTAATTATGTGGAAACTTTCCAACAACACAGTTTTGGTTATAATGGTTCAAACTTTGATGATGGCATGGATTTTTGGTATGACATATTCATCAGATCAGAAGAGTCAATAGAGTTGCCGGAGTTCTGA 777 0.3938 MVRAPCCEKMGLKKGPWTQDEDQILISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFSSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLVNSDSKRVVSNQKIKRSDSNSSTLTSSSACTSSSDFSSFSEGNKNMNNKNSMIKSEDTESEETTMPPIDESFWSEATVEDESSTMMMPSSNSWTISNEPQFNYVETFQQHSFGYNGSNFDDGMDFWYDIFIRSEESIELPEF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0079 258 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra8g0079 258 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vra8g0079 258 CDD SANT 69 112 IPR001005 -
Vra8g0079 258 CDD SANT 16 61 IPR001005 -
Vra8g0079 258 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vra8g0079 258 SMART sant 13 63 IPR001005 -
Vra8g0079 258 SMART sant 66 114 IPR001005 -
Vra8g0079 258 Gene3D - 13 66 - -
Vra8g0079 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra8g0079 258 MobiDBLite consensus disorder prediction 119 182 - -
Vra8g0079 258 Gene3D - 69 141 - -
Vra8g0079 258 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra8g0079 258 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
Vra8g0079 258 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 250 - -
Vra8g0079 258 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra8g0079 258 MobiDBLite consensus disorder prediction 130 169 - -
Vra8g0079 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0079 Vra-Chr8 857494 860007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0079 1 258 MYB Transcription Factor Family AT2G31180 48.519 6.98e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g0079 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0079 K09422 - gmx:100806975 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0186 3 2164911 2167028 Vra8g0079 8 857494 860007 PCT