LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g0073	ATGGCTCCGAAAAGAGTACCAGCGAAGAAGAAGCTACCGACTATTCAGGAGAAGGTTTCGAACCCGTTGTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGGGCGTTGCCTCCAAAGCGGGACCTGACTCGGTTCGTGAAATGGCCGAAGACCGTTCAAATCCAACGCAAGAAACGCATTCTCAAGCAGAGGCTCAAGGTCCCTCCCGCTCTCAATCAGTTTACAAAAACCCTCGACAAAAATCTCGCAACGAACCTATTCAAGATGCTGCTGAAGTACAGGCCAGAAGACAAAGCAGAGAAGAAAGAGCGTTTGTTGAAGAGGGCTCAGGCCGAGGCTGATGGGAAAAGTGTTGAAGCCAAGAAGCCTATTGTTGTTAAATATGGTCTCAATCATGTTACTTACCTTATTGAACAGAATAAAGCGCAACTTGTTGTGATTGCTCATGATGTGGACCCAATCGAACTTGTGGTCTGGCTTCCGGCACTCTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAAGCACGCTTGGGAACGGTTGTCCACAAGAAAACGGCTTCAGTTTTGTGCTTGACAACTGTCAAGAATGAAGATAAATTGGAGTTCAGTAGAATCCTAGAAGCTATTAAGGCTAACTTCAATGACAAGTATGACGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAGACCAGGGCCAAGGAGAAGCTCCTTGCAAAAGAAGCAGCCCAAAGAATGTCCTAG	774	0.4729	MAPKRVPAKKKLPTIQEKVSNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKSVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMS*	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g0073	257	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	117	204	IPR004038	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A family signature	28	45	IPR001921	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A family signature	45	62	IPR001921	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A family signature	65	84	IPR001921	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A family signature	89	102	IPR001921	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A family signature	123	143	IPR001921	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A family signature	184	208	IPR001921	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A family signature	216	236	IPR001921	-
	Vra8g0073	257	PANTHER	BNAA03G47020D PROTEIN	10	255	-	-
	Vra8g0073	257	Gene3D	-	49	232	IPR029064	-
	Vra8g0073	257	Coils	Coil	100	120	-	-
	Vra8g0073	257	SUPERFAMILY	L30e-like	87	228	IPR029064	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A/RS6 family signature	127	141	IPR018492	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A/RS6 family signature	146	159	IPR018492	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A/RS6 family signature	162	172	IPR018492	-
	Vra8g0073	257	PRINTS	Ribosomal protein L7A/RS6 family signature	172	186	IPR018492	-
	Vra8g0073	257	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	10	255	-	-
	Vra8g0073	257	ProSitePatterns	Ribosomal protein L7Ae signature.	165	182	IPR004037	GO:0042254\|GO:1990904

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g0073	Vra-Chr8	794321	796938	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g0073	1	257	Cytoplasmic Ribosomal Protein Gene Family	AT2G47610	83.268	2.48e-162	448

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g0073	K02936		-	gmx:100819609	462.225