Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0069 ATGGAAACTACAAGGCGGTGGTTTAGTAAGTTCAAGGGAAATGATAAAATGAAGTCTGCAAAAGAAACTACAGGCGTGACCAAAGAAGGGCCAAAGCCCCCAACAAATGAAGAACCACCTTCAAATGTAACCAAACAGAAGGTTGAAGCTGCAAAGCAGTACATAGAAAATCATTACAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCAGATGCTGAAGTGTCTGAGGAAGAGCAGCACAACTTGCTTCAGTATTTGGAGAAAAAGGAGAGGGAGTACATGCGGCTTCAGAGACATAAGATGGGGGCTGATGACTTTGAGCCGCTGACTATGATTGGAAAGGGTGCATTTGGAGAGGTTAGAGTCTGCCGGGAGAAGGCTACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCTGAGATGCTTCGTCGTGGCCAGGTTGAACATGTCAAAGCTGAGAGAAACCTGCTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAATATTTATATCTGATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTGACAGAAGATGAAGCCAGATTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAGCATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGTCACATGAAGTTATCAGATTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAAGAAAAGGACTTTTCTGTTGGAAATAACCGAAGTGGAGCCCTCCAAAGTGATGGACGTCCAGTGGCTCCTAAACGAACTCAACAGGAACAACTGCAGCATTGGCAGAAAAATCGACGAATGCTTGCCTATTCTACTGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTGCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCACCCTTTTACTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAACTAATTTGAAATTTCCAGAAGAAGCTAAACTTTCAGTAGAGGCAAAAGATCTTATTTGTAGACTCCTGTGTAATGTAGAGCAGAGGCTTGGAACCAAAGGAGCCTATGAAATAAAGGCCCATCCATGGTTCAAAGGCATCGAATGGGACAAACTGTACAAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAACTTTGAGAAGTTTGAAGAGGTAGACAAGCAAACTGTAGCTTGCTCAAAAGCAGGGCCCTGGAGAAAGATGCTGCCATCTAAAGATGTTAACTTCGTTGGGTACACATACAAGAATTTGGAAATCGTAAATGATCATGAAATACCAGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGGCCCTATTTGAGGATGAATCAGCTGTGGCTGCGAATCAACCTGTCAGAGGAAGCTTCTTAAACCTGTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAATGA 1638 0.4115 METTRRWFSKFKGNDKMKSAKETTGVTKEGPKPPTNEEPPSNVTKQKVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQHNLLQYLEKKEREYMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGNNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTNLKFPEEAKLSVEAKDLICRLLCNVEQRLGTKGAYEIKAHPWFKGIEWDKLYKMKAAFIPEVNDELDTQNFEKFEEVDKQTVACSKAGPWRKMLPSKDVNFVGYTYKNLEIVNDHEIPGIAELKKKSTKPKRPSIKALFEDESAVAANQPVRGSFLNLLPPQMEVPEKSESQ* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0069 545 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 14 543 - -
Vra8g0069 545 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vra8g0069 545 Gene3D Transferase(Phosphotransferase) domain 1 308 436 - -
Vra8g0069 545 Gene3D Transferase(Phosphotransferase) domain 1 201 279 - -
Vra8g0069 545 Pfam Protein kinase domain 119 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0069 545 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vra8g0069 545 MobiDBLite consensus disorder prediction 1 25 - -
Vra8g0069 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 543 - -
Vra8g0069 545 Coils Coil 59 86 - -
Vra8g0069 545 MobiDBLite consensus disorder prediction 1 45 - -
Vra8g0069 545 CDD STKc_NDR_like 115 480 - -
Vra8g0069 545 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra8g0069 545 Gene3D Phosphorylase Kinase; domain 1 88 200 - -
Vra8g0069 545 SMART serkin_6 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0069 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vra8g0069 545 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra8g0069 545 ProSiteProfiles Protein kinase domain profile. 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0069 545 SUPERFAMILY Protein kinase-like (PK-like) 96 458 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0069 Vra-Chr8 744186 754045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0069 1 539 AGC Kinase Gene Family AT4G14350 82.440 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vra8g0069 Pkinase 4.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0069 K08790 - gmx:100795087 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0197 3 2303454 2308149 Vra8g0069 8 744186 754045 PCT