Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0044 ATGCCATTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTACGGCAAAGAGTATGGGAGGCTAGTGGTCATTGTCGATGTCATTGACCAGAACAGAGCTCTTGTGGACGCCCCCGATATGGTGAGGTCCCAAGTGAACTTCAAGAGGCTGTCACTCACTGACATTAAGATTGATATCAAGAGGGTCCCAAAGAAGAAGGATCTCATTCAAGCCATGGACGCTGCTGATGTTAAGAACAGGTGGGAGAAAAGTTCATGGGGCAGAAAACTGATTGTGCAGAAGAGAAGAGCATCCCTCAATGACTTTGACAGGTTCAAGATTATGTTGGCAAAGATCAAGAGGGCAGCAGTTGTTAGGCAGGAGCTTGCTAAGCTGAAAAAGAGTGCTTCTTAG 402 0.4652 MPFKRYVEIGRVAQINYGKEYGRLVVIVDVIDQNRALVDAPDMVRSQVNFKRLSLTDIKIDIKRVPKKKDLIQAMDAADVKNRWEKSSWGRKLIVQKRRASLNDFDRFKIMLAKIKRAAVVRQELAKLKKSAS* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0044 133 PANTHER 60S RIBOSOMAL PROTEIN L14 1 132 IPR039660 GO:0003723|GO:0003735
Vra8g0044 133 Pfam Ribosomal protein L14 45 117 IPR002784 GO:0003735|GO:0005840|GO:0006412
Vra8g0044 133 Gene3D - 92 127 - -
Vra8g0044 133 SUPERFAMILY Translation proteins SH3-like domain 5 93 IPR008991 -
Vra8g0044 133 PANTHER RIBOSOMAL PROTEIN L14, PUTATIVE-RELATED 1 132 - -
Vra8g0044 133 CDD KOW_RPL14 7 79 IPR041985 -
Vra8g0044 133 Gene3D - 1 84 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0044 Vra-Chr8 459269 461213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0044 1 133 Cytoplasmic Ribosomal Protein Gene Family AT4G27090 81.955 4.93e-76 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0044 K02875 - gmx:100817659 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0044 8 459269 461213 Vra8g0044 8 459269 461213 ECH