Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0043 ATGGGAATAAGAGACTTCCATATCAAGCTTAAGGCATTCAGGGTGAAACGGTTTTTCTTTGGAAGAAGGAGAAATAAATGGAGAGGAAACAAGCCTTCATGGATGATTCCAATATCACATGGTCATCATGTGGTGGAGCATCATGTGATCAAAGGTGGTTCTGATGATGACTCAGAGTTTGATTCAGTTGTGATACAGAGGGAGCAGATGGATCGTACAGAACTATGGTATTTTGGAATCTTTGATGCTGTAGTTGGAGATGGAGTTACCAAGTTTGTGCAGTCCCATTTCTTTGGCAAGAAGCTCAAAGAGTGTCATATGAGGAGAAAAGGGAAAGAAACACTGAAGAGAGCTTACCTAGGTGTAAGAACAAAGATCAGAGAGGCACTGAAGCCAGAGGAGGAGATATGCAGAGTAGGTTCAACATCAGTGATGGTGATAAATGGAGAAAAGTTAGTGATAGCCAACATGGGAGATTACAGAACTGTTTTGTGCAGAAATGGTGTTGCTTATCAGACAACTGGCAGACACAGTCATTCAGCCAAGAGAAATTGGTATAGCAGACTCTTTTCAGTACGCATGATAGCTTGTGAATCAGGCAACACAACAGGTACAAAGCATTCTAAAGGCTCAGAACTTGTGGTGGGAGGTGATAGAATCGATTGTGATACTGAATTTTTGATCCTTGCAAGCAATGGCATATGGGAGGTGATGAAGAACCAAGAGGCTGTGAATCTCATAAGACATATTGAGGATCCACAAGAAGCAGCTGAGTGCTTGGCAAAGGAAGCTTTGATCAGGATGAGCAGAAGCAAAATTTCATGCTTAGTCATTCGCTTTGACTGA 846 0.4196 MGIRDFHIKLKAFRVKRFFFGRRRNKWRGNKPSWMIPISHGHHVVEHHVIKGGSDDDSEFDSVVIQREQMDRTELWYFGIFDAVVGDGVTKFVQSHFFGKKLKECHMRRKGKETLKRAYLGVRTKIREALKPEEEICRVGSTSVMVINGEKLVIANMGDYRTVLCRNGVAYQTTGRHSHSAKRNWYSRLFSVRMIACESGNTTGTKHSKGSELVVGGDRIDCDTEFLILASNGIWEVMKNQEAVNLIRHIEDPQEAAECLAKEALIRMSRSKISCLVIRFD* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0043 281 Pfam Protein phosphatase 2C 72 179 IPR001932 -
Vra8g0043 281 Pfam Protein phosphatase 2C 220 271 IPR001932 -
Vra8g0043 281 CDD PP2Cc 61 280 IPR001932 -
Vra8g0043 281 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 6 280 - -
Vra8g0043 281 ProSiteProfiles PPM-type phosphatase domain profile. 57 280 IPR001932 -
Vra8g0043 281 Gene3D - 45 281 IPR036457 -
Vra8g0043 281 PANTHER ALPHABET, ISOFORM E-RELATED 6 280 - -
Vra8g0043 281 SMART PP2C_4 51 278 IPR001932 -
Vra8g0043 281 SUPERFAMILY PP2C-like 63 281 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0043 Vra-Chr8 453231 456245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0043 1 280 PP2C-type Phosphatase Gene Family AT3G23360 45.936 3.92e-78 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0043 K19704 - gmx:100794054 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0043 8 453231 456245 Vra8g0043 8 453231 456245 ECH