Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0041 ATGGCGGAAACCAAAGAAGGTTCAGGTTCGGAAATGTCTCTGAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAGCAAGACCCTTCTAACCCTACTCTCTATAGTAATCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTAATAAAGCTCTAGATGATGCAGAGATGACAATCAAATTAAAACCCCAATGGGAGAAGGGATATTTCAGGAAGGGAAGCATATTGGAAGCCATGAAACGATACGATGATGCTTTAGCTGCCTTTCAGATAGCATTGCAGTATAACTCGCAAAGTCAAGAAGTATTAAGAAAGATAAAGAGGTTGAACCAACTGGTGAAAGATAGCAAGCGAGCCCAAGAAGTGGAGAATATGAGATCCAATGTTGACGTGGCCAAACATTTAGACACATTGAAATCTGAAATGGCTGGAAAGTATGGATCGGAATGCGGGAAAGATTTGTTCTCATTCCTTGTTGAGACTATAGAGAATGCTGTAAAATCATGGCATGAAACATCTTCAGTGGATGCTAGAGTTTACTTTCTTCTGGATAAGGAAAAGACACAGACCGATAAGTATGCCCCAGTTGTGAATATTGACAAGGCCTTTGAATCACCACATACGCACAGCAACTGCTTTTCATTTCTTAGGCAGTACGCAGAGGAATCTTTCTCCAAAGCAGCCTGCTTGGTAACTCCCAAAAGCATTATTGCTTACCCACAGGTCTGGAAGGGCCAAGGATCAAGAAAGTGGAAACATGCACACAGTGACGGTTTCTTTGTGCAGTTTGAGTCACCCTCTCTGCGAAAGCTCTTTTTCATACCTAGTTCAAACGAAAAGGGACAGACGTTGTGCAGGGATCCAGAGGTTTTGGACATTGGTGTTNATGAAGTTCTTCCCCGGTTATTCAAATAA 954 0.4256 MAETKEGSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNSQSQEVLRKIKRLNQLVKDSKRAQEVENMRSNVDVAKHLDTLKSEMAGKYGSECGKDLFSFLVETIENAVKSWHETSSVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHSNCFSFLRQYAEESFSKAACLVTPKSIIAYPQVWKGQGSRKWKHAHSDGFFVQFESPSLRKLFFIPSSNEKGQTLCRDPEVLDIGVXEVLPRLFK* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0041 317 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Vra8g0041 317 Coils Coil 51 71 - -
Vra8g0041 317 Gene3D Tetratricopeptide repeat domain 6 162 IPR011990 GO:0005515
Vra8g0041 317 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 13 317 - -
Vra8g0041 317 SUPERFAMILY TPR-like 13 122 IPR011990 GO:0005515
Vra8g0041 317 Pfam TPR repeat 18 58 - -
Vra8g0041 317 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vra8g0041 317 SMART tpr_5 45 78 IPR019734 GO:0005515
Vra8g0041 317 SMART tpr_5 79 112 IPR019734 GO:0005515
Vra8g0041 317 SMART tpr_5 11 44 IPR019734 GO:0005515
Vra8g0041 317 PANTHER TPR REPEAT CONTAINING PROTEIN 13 317 IPR045248 GO:0006457|GO:0030544|GO:0051879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0041 Vra-Chr8 427968 435088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0041 7 154 U-box Gene Family AT3G07370 25.000 4.01e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0041 - - gmx:100790717 587.8