Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0040 ATGGGGAGGACAGGCAAATGGCTCAGGAACTTGTTGACAGGGAAGAGAGACAGAGAAAAAGAGAAGGAAAAATGTAGTACAAACCTGTGTCTGTTAAATGGAACAACAGAGAATCCAACAACTCCTGCTTCTTCAACAACAACAACAACAACCACCAAGGAGAAAAGAAGGTGGAGTTTCAGGAGATCATCAGCTTCCAGGGAACTGAATCTTGCAGAATCTGGTGTTACTTCCTCTGTGACAGTGCAAACTACCACCACAGATGCTGAGAATGATCAAAGGAAACATGACACTGTGGTGGCTCTGGTGCCTGCTGATGCTGCTATCATCTGCTTGACTCCTGATTCCCATATATCGTCAACAAGTATTGAAGAGGCTGCAGCCATTAAAATTCAGTCAGTTTTTCGGTCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGACTAGTGAAGTTGCAGGCACTGGTGAGGGGTCATTTGGTGAGAAAACAGGCTAGGGAGACACTAAGATGCATGCAGGCTTTGGTCGTAGCACAAGCCAGAGCTCGTGCTCAGAGGGCAAGGATCGTGTCAGAAGGAAAAGTTGATCAAAACCTTTCACCCTACAGAATGACCCCAGAGGACAACTTCTTCATGCACATGTATAATGAAATGGAAAGTGGTTTGGAATTGGAAGAGAATGCCAAGATTGTTGAGATGGCTGTTTGCGAATCCAAAGCTAACTCCAGAGGCAGAAACAGCTCTGCAAATCGAGAACTTTCTGATCACAGATTTTCTACATATTACTCATCAAATGGTTCATACTCAAAGGAGGAAAACTACAATGCATCACCTGCACCATCAACACTGACAGAATTGAGTCCGAGAGCATACAGTGGTCATTTTGAGGATTGTTCCTTCAGCACAGCACAAAGCAGTCCCTATTACAACAACACAAGGCTACCTTTTTCCTTCCCTAAACCAGCCTACACAGAAGCCATGTCCTATGACTACCCTTTGTTTCCAAACTACATGGCCAACACAGAATCATCAAGGGCCAAAGCCAGATCACAGAGTGCACCAAAGGCAAGGCCAGATTCTGTTGAGAGGCAGCCAAGCCGGAGAAGGGCTTCAATGGAAGGGAGAAATGTCCCAAAGCCAGTCAGGATGCAGAGGTCATCTTCTCATGTTGGTGTCACTGCTCAAAACTACCAATATCCTTGGTCAATAAAGCTTGACAGGTCCATAGTCAGTGAGTGTGGCTCTACAAGCACAGTCCTCACAAACTCTAATTACTACTGCACATGA 1290 0.4543 MGRTGKWLRNLLTGKRDREKEKEKCSTNLCLLNGTTENPTTPASSTTTTTTTKEKRRWSFRRSSASRELNLAESGVTSSVTVQTTTTDAENDQRKHDTVVALVPADAAIICLTPDSHISSTSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQARETLRCMQALVVAQARARAQRARIVSEGKVDQNLSPYRMTPEDNFFMHMYNEMESGLELEENAKIVEMAVCESKANSRGRNSSANRELSDHRFSTYYSSNGSYSKEENYNASPAPSTLTELSPRAYSGHFEDCSFSTAQSSPYYNNTRLPFSFPKPAYTEAMSYDYPLFPNYMANTESSRAKARSQSAPKARPDSVERQPSRRRASMEGRNVPKPVRMQRSSSHVGVTAQNYQYPWSIKLDRSIVSECGSTSTVLTNSNYYCT* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0040 429 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Vra8g0040 429 Pfam IQ calmodulin-binding motif 126 144 IPR000048 GO:0005515
Vra8g0040 429 Pfam IQ calmodulin-binding motif 151 167 IPR000048 GO:0005515
Vra8g0040 429 Pfam Protein of unknown function (DUF4005) 307 377 IPR025064 -
Vra8g0040 429 Gene3D - 123 176 - -
Vra8g0040 429 MobiDBLite consensus disorder prediction 33 53 - -
Vra8g0040 429 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Vra8g0040 429 MobiDBLite consensus disorder prediction 343 390 - -
Vra8g0040 429 MobiDBLite consensus disorder prediction 361 376 - -
Vra8g0040 429 MobiDBLite consensus disorder prediction 33 59 - -
Vra8g0040 429 SMART iq_5 146 167 IPR000048 GO:0005515
Vra8g0040 429 SMART iq_5 123 145 IPR000048 GO:0005515
Vra8g0040 429 PANTHER IQ-DOMAIN 5-RELATED 1 418 - -
Vra8g0040 429 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0040 Vra-Chr8 423665 426282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0040 1 426 IQD Protein Family AT4G14750 47.020 7.40e-98 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0040 - - pvu:PHAVU_007G277500g 671.389