LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g0034	ATGAATCGTATCGATGATGGTCCTGTGATTGTGAAGGAGGAGTTTCCTGGTGAAGGGTTGGTTGCTCCACAGCCGCTTGAGGGGCTTCATGAAAGTGGTCCTCCACCTTTTCTCACAAAGACTTATGACATAGTTGATGATGTTTCCACTGATGAGATAGTTTCATGGAGCAGAGGAAACAACAGCTTCGTTGTCTGGGATCCTCAAGCTTTTTCCATCTCTCTTCTCCCCAAATACTTCAAACACAACAACTTCTCCAGCTTTGTCAGACAGCTCAACACCTATGGGTTCAGAAAGGTGGATCCTGACAAATGGGAGTTTGCTAATGAAGGTTTTCTTAGAGGACAGAAACATCTATTGAAGATCATAAGGAGGAGGAAGAGCAGTCATCAACCTCAGGCAGTACAACAATCTATGGAACATTGTGTTGAAGTGGGGAGGTTTGGATTAGATGGAGAAATCGATGGATTGAGACGTGACAAGCAAGTTCTGATGATGGAGCTGGTGAAACTTAGACAGCAACAGCAGAACACAAAAAACCACCTTCAATCAATGGAAAGTAGGCTCAAAAAGACTGAACAGAAACAGCAGCAGATGATGAAGTTCTTGGCAAAGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCAAGAAAGGGAGTGGAGGAAGGAGCTGGAGGAAGCTATTTCCAGCAAGAGAAGAAGGCCTATTGATGAAGGGCCTTGTGATGCTGAAGAATTTTCAGCTTTGGTTAAACTTGAACAGGAGGAGTACAATGAGATTTCAGAGCTTGAGGTTTCTGACATAGAGCTTGCTATGAACATGGAGGAACAAAGTGGAAGCCAAGAGAACACTTATGGTGAAGAAGAGAAAGGAGGCGAAGATGAAAGTAGAAATGAAGGCATTGAAGAAGTACTGTGGGAAGAACTTCTGAATGAGGGTGTTGAAGAAGATCTACTAGCATTGGAAAATGATGATAATGAACATGTAACTTTGTTGTCTGAAGAACTTGGTTATTGA	1023	0.4282	MNRIDDGPVIVKEEFPGEGLVAPQPLEGLHESGPPPFLTKTYDIVDDVSTDEIVSWSRGNNSFVVWDPQAFSISLLPKYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKIIRRRKSSHQPQAVQQSMEHCVEVGRFGLDGEIDGLRRDKQVLMMELVKLRQQQQNTKNHLQSMESRLKKTEQKQQQMMKFLAKAMQNPNFLQQLVQEREWRKELEEAISSKRRRPIDEGPCDAEEFSALVKLEQEEYNEISELEVSDIELAMNMEEQSGSQENTYGEEEKGGEDESRNEGIEEVLWEELLNEGVEEDLLALENDDNEHVTLLSEELGY*	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g0034	340	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	21	330	IPR027725	-
	Vra8g0034	340	ProSitePatterns	HSF-type DNA-binding domain signature.	76	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0034	340	MobiDBLite	consensus disorder prediction	278	303	-	-
	Vra8g0034	340	Coils	Coil	154	195	-	-
	Vra8g0034	340	Gene3D	-	29	127	IPR036388	-
	Vra8g0034	340	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-6B	21	330	-	-
	Vra8g0034	340	SUPERFAMILY	"Winged helix" DNA-binding domain	32	126	IPR036390	-
	Vra8g0034	340	PRINTS	Heat shock factor (HSF) domain signature	37	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0034	340	PRINTS	Heat shock factor (HSF) domain signature	75	87	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0034	340	PRINTS	Heat shock factor (HSF) domain signature	88	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0034	340	MobiDBLite	consensus disorder prediction	288	303	-	-
	Vra8g0034	340	SMART	hsfneu3	33	126	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0034	340	Pfam	HSF-type DNA-binding	37	126	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g0034	Vra-Chr8	362891	364793	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g0034	20	340	HSF	AT3G22830	56.510	8.24e-132	380

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vra8g0034		HSF_DNA-bind	3.1e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g0034	K09419		-	gmx:100806789	450.284