Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0020 ATGGAAGCGTCGTCGCCGCCACCACGCACCATCCTCGGTAGGTACCAGCTCACGCGATTCCTTGGCCGCGGCAACTTCGCCAAGGTCTACCAGGCGCGCTCACTCGTCGACGGCGCCACGGTGGCCGTCAAGGCCATCGACAAGTCCAAGACGGTCGACGCCGCCATGGAACCCCGCATTGTGCGCGAGATCGACGCTATGCGCCGTCTTCAGAACCACCCAAACATCCTCAAAATCCACGAGGTTCTCGCCACGAAGACCAAAATTTACCTTGTCGTCGACTACGCCGGCGGCGGCGAGCTCTTCTCCAAGCTCTCCCGGTGTGGCCGCCTCCCGGAGTCTCGGGCGCGGCGCTATTTCTCCCAACTCGTCTCTGCGCTCCTCTTCTGCCACCGCCACGGCATCGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGCCGCCGGCGACCTCAAGGTCTCTGACTTCGGCCTCTCCGCACTCCCGGAACACCTCCGTGATAACCTCCTCCACACCGCATGTGGCACGCCGGCCTTCACTGCGCCGGAGGTCCTACGCCGCGTCGGCTACGATGGTTCCAAGGCCGACGCTTGGTCCTGCGGTGTCATTCTCTACAACCTTCTCGCCGGCCACCTCCCCTTTGACGACTCGAACATTCCTGCCATGTGCCGCCGAATATCCCGCCGCGACTATCAATTCCCGGCGTGGATCTCAAAATCCGCGCGCAGCCTCATCCACCAGTTGCTGGACCCCAATCCTAAATCTCGAATTTCGCTTGAAAGAGTTTTCGATAACAGATGGTTGAGGGATAAGAAGCATGTTTGTTATAACGTGTTGGAGGAGAGTGTTGTGGAGTCTGATTTGTATAACAAGTGCTGCGACGGTTACAAGTTGGGGATGAACGCTTTTGACATAATATCAATGTCGTCGGGGTTGGACTTGCGAGGACTGTTCGAAACGACGTCGGAGAAGGGGAGGCGGAGGGAGAAGAGGTTCAGTTCGGAGAAGAGCGTGGGAACGGTGGAGGCGAAGGTGAAGGAGGTTGGGGAAAGGTTAGGGTTTAGGATTGAGGTTGGAAAGAACGGTGTAATTGGGTTAGGAAAGGGAAAAGTGGGTTTGGTAGTTGAGGTGTTTGAGATTGTGTCTGACTTGCTCCTTGTTGCTATTAAAGTTGTAGATGGTGCTATGGAGTTTGACCAACTTCATTGGGATGATTGGAAACTTGGGCTTGAAGATGTTGTTCTCTCATGGCATCACAATGAGTAA 1272 0.5637 MEASSPPPRTILGRYQLTRFLGRGNFAKVYQARSLVDGATVAVKAIDKSKTVDAAMEPRIVREIDAMRRLQNHPNILKIHEVLATKTKIYLVVDYAGGGELFSKLSRCGRLPESRARRYFSQLVSALLFCHRHGIAHRDLKPQNLLLDAAGDLKVSDFGLSALPEHLRDNLLHTACGTPAFTAPEVLRRVGYDGSKADAWSCGVILYNLLAGHLPFDDSNIPAMCRRISRRDYQFPAWISKSARSLIHQLLDPNPKSRISLERVFDNRWLRDKKHVCYNVLEESVVESDLYNKCCDGYKLGMNAFDIISMSSGLDLRGLFETTSEKGRRREKRFSSEKSVGTVEAKVKEVGERLGFRIEVGKNGVIGLGKGKVGLVVEVFEIVSDLLLVAIKVVDGAMEFDQLHWDDWKLGLEDVVLSWHHNE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0020 423 CDD CIPK_C 303 412 - -
Vra8g0020 423 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vra8g0020 423 PANTHER SERINE/THREONINE KINASE 9 421 - -
Vra8g0020 423 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 421 - -
Vra8g0020 423 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0020 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Vra8g0020 423 Gene3D Transferase(Phosphotransferase) domain 1 8 304 - -
Vra8g0020 423 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Vra8g0020 423 Pfam NAF domain 302 359 IPR004041 GO:0007165
Vra8g0020 423 Gene3D Kinase associated domain 1, KA1 305 417 - -
Vra8g0020 423 SUPERFAMILY Protein kinase-like (PK-like) 11 282 IPR011009 -
Vra8g0020 423 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0020 423 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0020 Vra-Chr8 243333 244885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0020 5 421 CBL-interacting serine-threonine protein kinases AT4G14580 57.209 4.15e-162 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra8g0020 Pkinase 1.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0020 K12761 - gmx:100305372 689.878