Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0011 ATGACACCCCTCAAACTGCATCACTTCCTCCTTCTCATGTTCATCTTCTTCTTCTTCTTCTTCTTGCTCCCTTCTTCCCACGCTCAAACGCCACGTCAGGCGAACAACACGGGCTTCACGTGCACGGGCACCCGCACCTGCGCCGCCTACGCCTTCTACCGTGCCTCCGCCCCCAACTTCCTGGACCTGGCCGCCGTGGGCGACCTCTTCGAGGTGAGCCGCCAAATGATAGCCACGCCGAGCAACATCTCCTCCGTGTCCTCCGCCTTGGTCGAAGACCAGCCCCTCTTCGTCCCTCTGACCTGCTCCTGCAACCCCGTGAATGCCACCTTCGGGTCCCTCTCCTACGCCAACATCTCCTACGCCATCCAACCCAACGATACCTTCTTCGTCGTCTCCACCTACAAGTTCAACAACCTCACCACTTACCCTTCCGTCGAAACCGTCAACCCCACCTTGGTCGCCACCAACCTCTCCATCGGCCAGGTCACCATCTTCCCTGTCTTCTGCAAATGCCCCGACACCAACAACACCAACTACATGATCTCCTACGTTGTGCAACCCGAGGACAACATCTCCTCCATTGCCTCAGCTTTTGGGGTTCAGGAACAGGCTATAATTGACGTCAACAACGACACACTCTATGATTACGACACCATTTTCATCCCTGTGGAGCAGCTTCCGTCTCTGTCGCAGCCTGCGGTGGCTCCGGCTGCGCCCCCTGGTGGGAATGGGAGTGACACTGGGAGTGGGAGTGGCAAGGATAGAACTGGAACTGTTAGAGGGTTGGGGATTGGGTTGGGGGTGGTGGGGATGTTATTGGTGTTGGTGGGTGGGGTGTGGTTGTGGAGAGAGTTTGTGATGAAGAAAAGGTTGGGATATGAGGATGAGGAGGAGGAGGGAGGGAGGAAGAAGGTGTATTCGGGCGGGAAAGAGGGTCAGAAAGCTGATTTCGATGTGAAACTGATGGCGAATGTGTCGGATTGTTTGGACAAGTACAGGGTTTTTGATGTTGAGGAACTGGTGGAGGCCACGGATGGGTTTGATTCAAGGTCCTTGATTGAGGGATCCGTTTACAAAGGGGAGATTGATGGGGAGCTCTTTGCCATCAAGAAGATGAAGTGGAATGCCTATGAGGAACTTAAGATCTTGCAGAAGGTAAACCATGGGAATCTGGTGAAGTTGGAGGGATTCTGCGTAGACCCAGAAGAAGCAAACTGTTATCTAGTCTATGAATATGTGGAGAATGGATCTCTATACTCGTGGTTGCATGAGGAGAGAAAGGAAAAGTTGAACTGGAAAACAAGGCTAAGAATAGCCATTGACATTGCCAACGGCCTCCAATACATCCACGAGCACACAAGGCCACGAGTTGTGCACAAAGACATCAAGAGCAGCAACATTCTGTTGGACTACAACAAGAGAGCCAAAATTGCAAATTTTGGGCTTGCAAAGTCTGGAATGAATGCCATCACCATGCACATTGTGGGAACACAGGGCTACATTGCCCCTGAATATCTGGCTGATGGTGTGGTCTCCACAAAGATGGATGTGTTCTCTTTTGGGGTTGTGTTACTTGAACTAATTTCTGGGAAGGAAGCCATTGATAAGGAGGGAAATCTGTTGTGGGCAAGTGCCATCAGAACCTTTGAGGTGGACAGTGAGCAAGAGAAGGCTAGAAGACTGAGGGAATGGATGGATAAGGACATTTTAAGGGAGACATGTTCAATGGAAAGTTTGATGGGTGTTCTCACTGTTGCAATTGCTTGCTTGCAGAAAGACCAGTCAAAGAGGCCAAGCATAATGGACATTGTCTATGCACTGTGTAAAAGTGAAGATTTGGGCTTTGACATCTCAGATGATGGGTTAGGCTCACCACGGGTGGTGGCTAGGTAG 1896 0.5105 MTPLKLHHFLLLMFIFFFFFFLLPSSHAQTPRQANNTGFTCTGTRTCAAYAFYRASAPNFLDLAAVGDLFEVSRQMIATPSNISSVSSALVEDQPLFVPLTCSCNPVNATFGSLSYANISYAIQPNDTFFVVSTYKFNNLTTYPSVETVNPTLVATNLSIGQVTIFPVFCKCPDTNNTNYMISYVVQPEDNISSIASAFGVQEQAIIDVNNDTLYDYDTIFIPVEQLPSLSQPAVAPAAPPGGNGSDTGSGSGKDRTGTVRGLGIGLGVVGMLLVLVGGVWLWREFVMKKRLGYEDEEEEGGRKKVYSGGKEGQKADFDVKLMANVSDCLDKYRVFDVEELVEATDGFDSRSLIEGSVYKGEIDGELFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCVDPEEANCYLVYEYVENGSLYSWLHEERKEKLNWKTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDYNKRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDKEGNLLWASAIRTFEVDSEQEKARRLREWMDKDILRETCSMESLMGVLTVAIACLQKDQSKRPSIMDIVYALCKSEDLGFDISDDGLGSPRVVAR* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0011 631 MobiDBLite consensus disorder prediction 232 255 - -
Vra8g0011 631 Gene3D Transferase(Phosphotransferase) domain 1 414 617 - -
Vra8g0011 631 ProSiteProfiles LysM domain profile. 182 228 IPR018392 -
Vra8g0011 631 CDD LysM 182 222 IPR018392 -
Vra8g0011 631 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 629 - -
Vra8g0011 631 PANTHER - 9 629 - -
Vra8g0011 631 SMART LysM_2 183 223 IPR018392 -
Vra8g0011 631 SMART serkin_6 348 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0011 631 Pfam LysM domain 184 222 IPR018392 -
Vra8g0011 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Vra8g0011 631 Gene3D Phosphorylase Kinase; domain 1 317 413 - -
Vra8g0011 631 Pfam Protein kinase domain 365 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0011 631 SUPERFAMILY Protein kinase-like (PK-like) 332 608 IPR011009 -
Vra8g0011 631 Gene3D LysM domain 181 223 IPR036779 -
Vra8g0011 631 ProSiteProfiles Protein kinase domain profile. 292 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0011 Vra-Chr8 182320 186178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0011 11 610 Receptor kinase-like Gene Family AT2G23770 33.333 4.08e-87 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vra8g0011 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0011 - - gmx:100802872 895.19