Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0009 ATGGAAAGCAGAGTGGTATTTGAGAGTGATCTGAACCTCAAGGCAACAGAACTTAGATTAGGGTTGCCAGGGACAGAGGAAAAGGAAGACAAGAACCTGTGTACACATGCTGTTATTAGAAACAACAAAAGACAAGTGCGTGAATCTTCTCAAGACTCCGTTTCCATTTCCAAGGCTTCACATCACCAACAACACGTAGAGACTGTTTCAGCCCCTCCATCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAGAACAGTGTGCAGGAGGGTGAGGGGGATGGGATCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAAATTGACTTGAAAGTCTACAGAGGCTATCCAGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGGCCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGGTCTGAATATGCTCCTACATATGAAGACAAGGACGGTGACTGGATGCTAGTTGGAGATGTTCCATGGCACATGTTTGTGACTTCTTGCAAAAGACTAAGAATCATGAAAGGCTCGGAAGCAAGAGGTTGGGTTGTCTTGTATGAGAAAGAAACAGCTAAATTAATATGGCCATGA 621 0.4444 MESRVVFESDLNLKATELRLGLPGTEEKEDKNLCTHAVIRNNKRQVRESSQDSVSISKASHHQQHVETVSAPPSKAKIVGWPPIRSYRKNSVQEGEGDGIFVKVSMDGAPYLRKIDLKVYRGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWHMFVTSCKRLRIMKGSEARGWVVLYEKETAKLIWP* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0009 206 MobiDBLite consensus disorder prediction 44 71 - -
Vra8g0009 206 MobiDBLite consensus disorder prediction 48 70 - -
Vra8g0009 206 Pfam AUX/IAA family 16 191 IPR033389 -
Vra8g0009 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 192 IPR003311 GO:0005634|GO:0006355
Vra8g0009 206 ProSiteProfiles PB1 domain profile. 99 186 IPR000270 GO:0005515
Vra8g0009 206 Gene3D - 94 197 - -
Vra8g0009 206 PANTHER AUXIN-INDUCED PROTEIN 1 192 - -
Vra8g0009 206 SUPERFAMILY CAD & PB1 domains 89 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0009 Vra-Chr8 160826 162696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0009 102 190 B3 DNA Binding Superfamily AT2G46530 39.326 1.84e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra8g0009 AUX_IAA 1.1e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0009 K14484 - gmx:100800212 315.079