Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0005 ATGGATTCATTTTTTCCCGAGAAACTTCTGGGTGAGATCTTCTGGGATCAACCGCTTTTGCCCACTGATCAAAATGATGTAGTTCAAAATTCCCAAATCATCAAGGCTGAAGCTTTCCCTCCAGCAACTCAAAGTGCTTTTGTTCAATATAGAGACCTACCCAGAAGAAATAACCCTCTAAACGGGTCAAATTCAGAGAGCATGAGTAAGAGGATGCTTGCGTTCTTGAGAAAAAGTTCCCCCGTGGAGAGAAATAACGTAGAAGAGAATGAAAGAGATCGCAGTTTCAGGCACATGATCAACGAGAGAATGAGAAGACAGAGACAGAGACAATGTTGCTTGGCCCTGCATTCAATTTTACCACACGGAACCAAAACGGATAATAATTCTGTAATTCAAACAGCAGCAAAGGAGATTGTAAGGCTACAAGGATGCAGAGAAGAGTTGCAGAGGAAAAATTGCGAGGCTGAAGGTGTTTGTGTGAGGAAGAAAGACGGAGGAAGCAAGATTGCATATTTGAGAGTTGCTGATCCCGAGTGTGGAATTGATTCAATGGTTGAGAGGCTGAAGTGGTTGAAAGAGGAAGGAGTGGAGAGCAGGAGGATCAAATCAAGTTTCTCCCCAAAGGAGTTGTTTGCAGTGTTAGAGATAGAGAGTGGTGAGGAGGTATAA 672 0.4315 MDSFFPEKLLGEIFWDQPLLPTDQNDVVQNSQIIKAEAFPPATQSAFVQYRDLPRRNNPLNGSNSESMSKRMLAFLRKSSPVERNNVEENERDRSFRHMINERMRRQRQRQCCLALHSILPHGTKTDNNSVIQTAAKEIVRLQGCREELQRKNCEAEGVCVRKKDGGSKIAYLRVADPECGIDSMVERLKWLKEEGVESRRIKSSFSPKELFAVLEIESGEEV* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0005 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Vra8g0005 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 156 IPR036638 GO:0046983
Vra8g0005 223 Gene3D - 83 157 IPR036638 GO:0046983
Vra8g0005 223 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 219 IPR044658 -
Vra8g0005 223 Coils Coil 132 152 - -
Vra8g0005 223 PANTHER TRANSCRIPTION FACTOR BHLH92 1 219 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0005 44 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 38.462 2.48e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0005 - - pvu:PHAVU_007G280700g 374.785