Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0004 ATGGACACATCTCTGGTGTTTACGGTGCAGAGACGGGAGCCAGAGCTGATAGCTCCGGCGAAGGCCACTCCTCGAGAAGTGAAGCTACTCTCAGACATAGATGACCAAGACGGGTTAAGGTTTCAGATTCCAGTGATACAGTTCTATCGATATGATCCAGCGCTGGCAGGGAGAGACCCTGTTGGGGTTATCAGAGAGGCTTTGGCCAAAACGCTTGTGTTTTACTATCCCTTTGCAGGTAGGCTGAGGGAAGGAGCCGGTCGGAAACTCATGGTGGACTGCACAGGGGAAGGTGTTTTGTTCATTGAAGCTGATGCAGATGTCACACTTGCTCAATTTGGCCACGCTCTTCAACCTCCTTTCCCCTGCTGGGAGAATCTTCTTTACGATGTTCCTTTCTCCCAAGGAGTTCTTCACACTCCCCTTCTCCTCATCCAGGTAACGCGCCTGAAGTGCGGGGGTTTCATATTCGCGCTCCGTCTGAACCACACCATGAGTGACGCAGCGGGTCTGGTCCAGTTCATGAACGCGGTGGGAGAGATAGCTCGCGGGAGGCAGGAGCCATCGGTCCCACCTGTGTGGCGCAGAGAACTTCTGAACGCGCGGGACCCACCGCGAGTGACGTGCATCCACCGCGAGTATGACGTCGTCCCCGACACGAAAGGCACGATCATCCCCGTGGACGACATGGCCCACCGCTCCTTCTTCTTCGGCCGCAGCGAACTTTCGGCCATCCGGCGCCTCCTGCCCCCTCACCAGAGCCAGTGCTCCAGCTTCGATGTCCTGACCGCGTGCCTATGGAGGTGCCGCACCCTGGCCCTGCAACCCGACAGCGACGAGGAGGTCCGCATTATATGCATCGTGAACGCTCGCTCGAAATTCAACCCTCCTCTGCCAGAAGGTTACTATGGCAACGTTTTTGCTTTCTCCGTGGCGGTTACGACTGCGGGAAAGTTATGCGAGAATCCGTTGGGGTATGCTTTGGAGTTGGTGAGGAAAGCGAAGGCGGATGTGAGCGAGGAGTACATGCATTCGTTGGCAGATCTGATGGTTACTCGAGGACGGCCTCACTTCACGGTGGTGAGGTCGTATCTGGTGTCGGATGTGAGACGAGCGGGGTTCGAAGACATTGATTTCGGGTGGGGTAAAGCTGTGTATGGAGGACCGGCGAAGGGCGGTGTTGGAGCCATTCCTGGTGTGGCGAGCTTTTACATACCCTTCAGAAATGATAAGGGAGAAGAAGGTTTGGTTATGCCAGTTTGCTTACCCTCTGAAGCCATGCAAAGGTTTGAGAAGGAGTTGGACTCTGTGCTCAACAATAGCCTTCCACCAACTATCAATACTATTTCATCTTCAAATTCCAGGCAGCTCCTTCTTTCTTCCTTGTAG 1389 0.5464 MDTSLVFTVQRREPELIAPAKATPREVKLLSDIDDQDGLRFQIPVIQFYRYDPALAGRDPVGVIREALAKTLVFYYPFAGRLREGAGRKLMVDCTGEGVLFIEADADVTLAQFGHALQPPFPCWENLLYDVPFSQGVLHTPLLLIQVTRLKCGGFIFALRLNHTMSDAAGLVQFMNAVGEIARGRQEPSVPPVWRRELLNARDPPRVTCIHREYDVVPDTKGTIIPVDDMAHRSFFFGRSELSAIRRLLPPHQSQCSSFDVLTACLWRCRTLALQPDSDEEVRIICIVNARSKFNPPLPEGYYGNVFAFSVAVTTAGKLCENPLGYALELVRKAKADVSEEYMHSLADLMVTRGRPHFTVVRSYLVSDVRRAGFEDIDFGWGKAVYGGPAKGGVGAIPGVASFYIPFRNDKGEEGLVMPVCLPSEAMQRFEKELDSVLNNSLPPTINTISSSNSRQLLLSSL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0004 462 PANTHER - 8 443 - -
Vra8g0004 462 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 443 - -
Vra8g0004 462 Gene3D - 220 434 IPR023213 -
Vra8g0004 462 Gene3D - 5 216 IPR023213 -
Vra8g0004 462 Pfam Transferase family 9 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0004 Vra-Chr8 82449 84305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0004 9 434 Monolignol Biosynthesis Gene Families AT5G48930 31.532 3.13e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0004 K19861 - gmx:100797017 785.793