Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0003 ATGGAGATTGCGCTCACTTGCTTCTTCTGTGGCAGAGTCCCACCCACGCTCAAATTGGGGCCTGCTGCAACTGCAACTCCAACTCTAACTCACCACTTCCCTTGTAACAATGCCTCCACCCACCTGCTTTCTTCCTTCCCCCCTTCGCTTCGACTCTATCGCCTGATTCCGAACGCTACTAACAGCACCCAACCCAAGGTTTCCACCAACTCTAAAACCAGAAGAAGGAGAAGAAGAAGTAGCGAGACTCAGCTGGTGGTGGAGGATGCTGCTGCTGTCCATCACAACGGAGACCCAATTGGGAAGAAGGATCTCGGGAAGAGTGTTATGAGATGGATTCGCGACAGCATGAGGGCCATGTCGTCTGATTTAGCTGCGGCGGAGATGCTGGGAGAGATGGAGTTGTGGGAGCGCATGGGACCGGGTCTCCCTTTTATTATGCAGGCACAGCCCTATCTAAATGCGGTTCCTATGCCCATTGGCCTTGAAGGTGTTTGCTTGAAGGCCTGCACGCACTACCCCACTCTGTTCGACCATTTTCAGAGGGAGCTTCGCGCTGTTCTCCAAGACCTGCAGAACGACAACTCCATTCAGGACTGGCGGGACACCAAGTCTTGGAAACTGCTTAAGGAGCTCGCCAATTCAGCTCAGCATAGGGCAGTTGTGAGAAAGATAGCACAACCCAAGAGTGTCCAAGGCGTTTTAGGAATGGACTTGGGAAAGGTCAAAGCAATACAGCACAGGATTGATGAATTCACCAATCGCATGTCAGAATTACTCAGTGTCGAAAGGGATGCTGAATTGGAGTTTACGCAGGAGGAATTGGATGCCGTTCCTAAACCAGATGATGTTTCTGATTCTTCAAAACCTCTTGATTTCTTGGTTAGTCATAGCCAACCTCAACAAGAACACTGCGACACCATTTGTAATTTAAATGCCATCAGTACCTCTACAGGACTGGGGGGAATGCATCTGGTTTTATTCAAGGTTGAAGGGAACCACCGGTTACCACCCACTGCTCTTTCACCCGGAGACATGGTTTGTGTAAGAACATACGACAGCAGGGGTGCAATTACAACTTCTTGCATACAAGGGTTTGTGAACAGTTTTGGAGATGATGGCTATAGTATTACAGTTGCTTTAGAGTCACGCCATGGTGACCCTACGTTCTCTAAACTTTTTGGGAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGGAACTGTGAAGCTCTAATGCTGCTTCAGAAGAATGGTTTGCGTAAGAAGAATCCTTCAATTTCTGTTGTTGCTACTCTGTTTGGAGATGGGGAAGATGTTGCATGGCTAGAGAAGAATGATTTTGCTGACTGGGCAGAAGAAAAATCTGATAGAATTTTAGGAAGTGACAGCTTTGATGATTCTCAACGGAGAGCAATTGCACTGGGTTTGAATAAAAAGAGGCCTGTGTTGGTTATCCAAGGCCCTCCCGGTACAGGCAAGACTGGTTTGCTCAAGCATCTTATAGTATGTGCTGTTCAGCAAGGTGAACGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTAGATAACATGGTTGAAAAACTTTCTAATGTCAGATTAAATGTTGTGCGGGTTGGAAATCCAGCCCGGATATCAAAAACAGTGGCATCGAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGCGAAGAATATGAGAGAAAGAAGTCAGATTTAAGAAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTGCGGGCATACGGCAACTTCTGAAGCAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAGCAGATAGTTAATGAAGTTCTATCCAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGACCCTTTGATCCGAAGACTAGATACTTTTGACTTGGTCGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAAGGTAAGCGGTGTGTTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATACTATCTAGAAAGGCCTTGGAAGGTGGTCTAAGAATATCTCTATTGGAAAGAGCTGCAACTTTACATGAAGGGATTCTCACCACTAGGTTAACTACACAATACCGAATGAATGATGCTATTTCTAGTTGGGCTTCGAAGGAGATGTACGGAGGATTGTTGAAGTCCTCTGAGACTGTATCTTCTCATCTTCTTGTAGACTCTCCTTTCGTCAAGCCTACCTGGATAACACAATGCCCACTACTATTGTTAGATACCAGAATGCCATATGGAAGTTTGTCAGTTGGTTGCGAAGAGCATCTAGACCCAGCTGGAACAGGCTCACTTTATAATGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTCTTTTCCTTAATTTATTCTGGTGTTAGCCCAGCTGCTATTGCAGTGCAATCTCCCTATGTTGCTCAAGTACAACTTTTGAGGGACAGGCTGGATGAGTTTCCAGAAGCCGCAGGCACAGAGGTTGCAACCATTGACAGTTTTCAAGGTCGGGAAGCTGATGCGGTAATTTTATCGATGGTTCGATCAAACACATTGGGAGCTGTTGGATTCCTCGGGGATAGCAGAAGAATCAACGTTGCCATCACAAGAGCACGCAAACATGTGGCTTTGGTCTGTGACAGCTCGACTATATGCCACAATACCTTCTTAGCAAGACTTCTTCGTCATATTAGACACTTTGGTAGGGTGAAGCATGCAGAACCAGGTAGTTTTGGAGGATACGGGCTTGGGATGAATCCAATATTACCTTCCATTAATTAG 2841 0.4586 MEIALTCFFCGRVPPTLKLGPAATATPTLTHHFPCNNASTHLLSSFPPSLRLYRLIPNATNSTQPKVSTNSKTRRRRRRSSETQLVVEDAAAVHHNGDPIGKKDLGKSVMRWIRDSMRAMSSDLAAAEMLGEMELWERMGPGLPFIMQAQPYLNAVPMPIGLEGVCLKACTHYPTLFDHFQRELRAVLQDLQNDNSIQDWRDTKSWKLLKELANSAQHRAVVRKIAQPKSVQGVLGMDLGKVKAIQHRIDEFTNRMSELLSVERDAELEFTQEELDAVPKPDDVSDSSKPLDFLVSHSQPQQEHCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTALSPGDMVCVRTYDSRGAITTSCIQGFVNSFGDDGYSITVALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNDFADWAEEKSDRILGSDSFDDSQRRAIALGLNKKRPVLVIQGPPGTGKTGLLKHLIVCAVQQGERVLVTAPTNAAVDNMVEKLSNVRLNVVRVGNPARISKTVASKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQIVNEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCVLAGDQCQLAPVILSRKALEGGLRISLLERAATLHEGILTTRLTTQYRMNDAISSWASKEMYGGLLKSSETVSSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYSGVSPAAIAVQSPYVAQVQLLRDRLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHVALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0003 946 Pfam AAA domain 472 688 IPR041677 GO:0004386
Vra8g0003 946 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 66 946 - -
Vra8g0003 946 SMART ultradead3 468 720 IPR014001 -
Vra8g0003 946 Gene3D - 275 406 - -
Vra8g0003 946 Coils Coil 573 593 - -
Vra8g0003 946 CDD SF1_C_Upf1 722 918 IPR041679 -
Vra8g0003 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 908 IPR027417 -
Vra8g0003 946 MobiDBLite consensus disorder prediction 61 84 - -
Vra8g0003 946 CDD DEXXQc_SMUBP2 471 721 - -
Vra8g0003 946 Gene3D - 720 928 IPR027417 -
Vra8g0003 946 Gene3D - 256 704 IPR027417 -
Vra8g0003 946 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 66 946 - -
Vra8g0003 946 Pfam AAA domain 698 901 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0003 Vra-Chr8 69595 80412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0003 466 661 Core DNA Replication Machinery Family AT1G08840 26.768 5.02e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0003 - - gmx:100799347 1612.43