Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3602 ATGGGTGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAGCAGTACGATCTGTTAGGGAAAATCGGCGAAGGCACTTATGGTCTCGTTTTTCTTGCAAGAACCAAAACCCCCTCTCCCTCCAAATCCATAGCTATCAAGAAGTTCAAACAGTCCAAGGACGGCGATGGGGTTTCCCCCACCGCCATCCGAGAAATCATGTTGTTGAGGGAGATTACGCACGAGAACGTCGTGAAGCTCGTCAATGTCCACATCAACCACGCCGACATGTCGCTCTACCTCGCCTTCGATTACGCCGAACATGATCTTTACGAAATTATTAGGCATCACAGAGACAAACTCAACCATTCTATTAATCAGTACACGGTTAAGTCTTTGCTCTGGCAGTTGCTCAATGGATTAAGTTATCTGCACAGTAATTGGATGATACATCGAGATTTGAAGCCATCAAATATATTGGTTATGGGCGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCAAGGATATATCAAGCTCCTCTGAAGCCGCTATCTGATAATGGGGTTGTTGTAACTATTTGGTATCGTGCACCAGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACCTCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAGAAGTGGCCTTCGTTGGCAAGTCTTCCACATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGACAACACCGGTCTCTATAATGTTGTGCACCTATCTACAAAAAGTCCTGCATACGACCTATTGTCAAAGATGCTTGAATATGATCCTCGGAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATCGAACCATTACCTGGACGGAATGCTCTTGTACCTTGTCAACTTGGAGAGAAAATTGTAAATTATCCCACTCGTCCCGTGGATAACACAACTGATCTTGAAGGGACAACCAATCTGGCAGCTTCACAAGCGGTAACTGCAGTTTCTGGCAGCATGCCTGGTGCTCATGGATCTAATAGATCGGTTCCTCGGCCAATGAATGTTGTTGGAATGCAAAGATTGCCATCTCAGCCAATGGCGGCTTATAATCTCACATCTCAGGCAGCCATGGGAGACGGAATGAATCCTGGGAATATCTCAAAGCAACGAGGTGTTCCACAGGGCCATCCGCAACAGTTGAGAAGGAAAGAGCAAATGGGGATGCCGGGATACCCTTCACAGCAGAAGTCAAGACGAATATAA 1386 0.4589 MGDGSGSRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKTPSPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPHWQQDVQHIQGHKYDNTGLYNVVHLSTKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDNTTDLEGTTNLAASQAVTAVSGSMPGAHGSNRSVPRPMNVVGMQRLPSQPMAAYNLTSQAAMGDGMNPGNISKQRGVPQGHPQQLRRKEQMGMPGYPSQQKSRRI* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3602 461 PANTHER CYCLIN-DEPENDENT KINASE E-1 8 460 - -
Vra7g3602 461 Gene3D Transferase(Phosphotransferase) domain 1 100 343 - -
Vra7g3602 461 MobiDBLite consensus disorder prediction 416 461 - -
Vra7g3602 461 SUPERFAMILY Protein kinase-like (PK-like) 13 328 IPR011009 -
Vra7g3602 461 ProSitePatterns Protein kinases ATP-binding region signature. 24 50 IPR017441 GO:0005524
Vra7g3602 461 Pfam Protein kinase domain 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3602 461 SMART serkin_6 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3602 461 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
Vra7g3602 461 PANTHER CELL DIVISION PROTEIN KINASE 8 460 - -
Vra7g3602 461 CDD STKc_CDK8_like 17 327 - -
Vra7g3602 461 ProSiteProfiles Protein kinase domain profile. 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3602 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3602 Vra-Chr7 55439500 55447782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3602 1 461 Core Cell Cycle Gene Families AT5G63610 75.789 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Vra7g3602 Pkinase 1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3602 K02208 - gmx:100794990 896.73