Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3579 ATGGGTAGAACACCCTGCAAAGAAAAACAGCACCTTTTAAAAGGAGCATGGTCTAAGGAGGAAGATCAAATCCTCATTAATTATGTCAACCGTCATGGAGAAGGCAACTGGAGTTCTCTTCCTAAGGCAGCAGGCTTGCTTCGGTGTGGTAAAAGTTGCAGACTCAGATGGATGAATTACCTGAGACCCGACCTCAAGAAGGGGAACTTCACTCAAGAAGAGACTAATCTCATCATTCACCAGCATAGCTTACTAGGAAACAAATGGGCACAGATAGCAGCATGTTTACCTGGAAGAACAGATAACGAGATAAAAAACTACTGGAACACCAAAATCAAGCGTAAGTTCTATGCCAATGGAATCGACCCTGTGACCCATAAACCACTCAACAAGGAAACCACTGACACAACAGACCTACCTGCTAATTCTCAAGTGTCTGAGGTTGCCACCACAAGTGAGATTAACAACAACAACAACAGCAGTTCCAGCTTCATTGGCAGCAACCAAATCCGCTATTTCAATGTTTTTCTCAATTCAAAGATGCAGATCAGAAGTGATGGTTACTCAACAGGTGATAAAGGTGAATGCTCTAACAACAGTAGTGGTGTTACCATAGAGGAAGCTCATCCTCAAATCAACTTGAACCTTTCCTTATCTCCACCACCAAAGCCCCAAGATTTTTGCGTGAACCCTGAAGGGCTGCAACCACAAGGGCAACAAGAAGAGCCAGCTTTGTCTGCAAGGAATGTTGATGGTGGTAAACGAGGTTTGTGTCTGTGGTGCAGTCTAGGGTTGCAAAGTAACCATGCTTGTGGCAGCAAAGATAAGGGTAACAATGATGATTGCTGA 849 0.4393 MGRTPCKEKQHLLKGAWSKEEDQILINYVNRHGEGNWSSLPKAAGLLRCGKSCRLRWMNYLRPDLKKGNFTQEETNLIIHQHSLLGNKWAQIAACLPGRTDNEIKNYWNTKIKRKFYANGIDPVTHKPLNKETTDTTDLPANSQVSEVATTSEINNNNNSSSSFIGSNQIRYFNVFLNSKMQIRSDGYSTGDKGECSNNSSGVTIEEAHPQINLNLSLSPPPKPQDFCVNPEGLQPQGQQEEPALSARNVDGGKRGLCLWCSLGLQSNHACGSKDKGNNDDC* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3579 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vra7g3579 282 CDD SANT 69 110 IPR001005 -
Vra7g3579 282 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra7g3579 282 SMART sant 13 63 IPR001005 -
Vra7g3579 282 SMART sant 66 114 IPR001005 -
Vra7g3579 282 CDD SANT 16 61 IPR001005 -
Vra7g3579 282 Gene3D - 69 142 - -
Vra7g3579 282 Gene3D - 13 66 - -
Vra7g3579 282 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vra7g3579 282 PANTHER TRANSCRIPTION FACTOR MYB7 1 231 - -
Vra7g3579 282 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 231 - -
Vra7g3579 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vra7g3579 282 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra7g3579 282 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra7g3579 282 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3579 Vra-Chr7 55133774 55135959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3579 1 271 MYB Transcription Factor Family AT4G38620 44.689 1.30e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g3579 Myb_DNA-binding 2.8e-15 CL0123