Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3556 ATGGATTTCATAGTAGAGAAGAAGGAATCAGAGAACAACAACACTAATAACCCCGAAGACGCTCATCAAACATTAGATTCCTCTTCTCAGTTAGCTTTGACACTTGATTCAAGTAGCAAAGAAACAGAAGAACAACAATCTCATGAACTCAAAGTTGGTCTTCACCCTTTGAAGAAAGTGGATCGAAAGCATGGAAAGAGGCCACTTCCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGCAGAAGAAAAAACGTTTCCGTTTTATTTTTCTCGGTCTAAGCAAGACGTGTCTGCTGTGGTATCGGCCCTTGTTCAAGTCATTGGTGGCAATCCACTGCCTGAAGATCCAACGACACTTTCTCACTCCACTTCTGTTCAGAATAATTCGAACGAACCATCGCATCCACCACCACAACAAGGAAGCGCAAGAAAACAGTACAGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCCGCGGAGATTCGCGACCCGAAGAAAGCAGCCAGAGTTTGGCTGGGAACTTTTCCCACCGCGGAGGCTGCTGCACTTGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTTCCAGAAAAAGTTCATCTCTCAGGGGAATTAGGTTACCTCACAAATCGTCCACCATCGTTACAAGCCACTTCAACTCCCTTCCAACTGCTTCCTCGTCACACTGCAACTGATAATGATGCCATTCTTTCTTCCTCTTCTTCGCCATCGTCTTCAACCTTTTCGATGAACTCCGCAGCTTCTTCTTCCGAGCCTCCTACCAAACGGAAACCTGATTTCGATGCCAAACAAAAACGTTGA 846 0.4551 MDFIVEKKESENNNTNNPEDAHQTLDSSSQLALTLDSSSKETEEQQSHELKVGLHPLKKVDRKHGKRPLPEEEEEEEEEEKAEEKTFPFYFSRSKQDVSAVVSALVQVIGGNPLPEDPTTLSHSTSVQNNSNEPSHPPPQQGSARKQYRGVRQRPWGKWAAEIRDPKKAARVWLGTFPTAEAAALAYDEAALRFKGSKAKLNFPEKVHLSGELGYLTNRPPSLQATSTPFQLLPRHTATDNDAILSSSSSPSSSTFSMNSAASSSEPPTKRKPDFDAKQKR* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3556 281 MobiDBLite consensus disorder prediction 1 89 - -
Vra7g3556 281 MobiDBLite consensus disorder prediction 1 15 - -
Vra7g3556 281 PANTHER DNA-BINDING DOMAIN 72 254 IPR044808 GO:0003700|GO:0009873
Vra7g3556 281 MobiDBLite consensus disorder prediction 41 56 - -
Vra7g3556 281 MobiDBLite consensus disorder prediction 16 40 - -
Vra7g3556 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 72 254 - -
Vra7g3556 281 MobiDBLite consensus disorder prediction 237 267 - -
Vra7g3556 281 MobiDBLite consensus disorder prediction 110 153 - -
Vra7g3556 281 SMART rav1_2 147 210 IPR001471 GO:0003700|GO:0006355
Vra7g3556 281 CDD AP2 146 205 IPR001471 GO:0003700|GO:0006355
Vra7g3556 281 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Vra7g3556 281 PRINTS Ethylene responsive element binding protein signature 170 186 IPR001471 GO:0003700|GO:0006355
Vra7g3556 281 MobiDBLite consensus disorder prediction 117 142 - -
Vra7g3556 281 MobiDBLite consensus disorder prediction 237 281 - -
Vra7g3556 281 ProSiteProfiles AP2/ERF domain profile. 147 204 IPR001471 GO:0003700|GO:0006355
Vra7g3556 281 Gene3D AP2/ERF domain 146 206 IPR036955 GO:0003700|GO:0006355
Vra7g3556 281 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Vra7g3556 281 Pfam AP2 domain 147 196 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3556 Vra-Chr7 54907064 54912975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3556 64 244 AP2-EREBP Transcription Factor Family AT5G61890 49.744 1.72e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g3556 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3556 - - vra:106766671 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1214 4 19096208 19099616 Vra7g3556 7 54907064 54912975 ECH
Vra7g3556 7 54907064 54912975 Vra7g3556 7 54907064 54912975 ECH
Vra7g3556 7 54907064 54912975 Vra5g0593 5 8249075 8251485 PCT