Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3553 ATGCCTTTTCAAATCATGGATCGCAGGGGCGTTTCTGCTTCATCCCACTTTTTTGAAGACGTTTCCTTCCGTTCTGAGAGGAATGTTGGATTACGGAAACCGATATCCATTAATGATCCTTACCCACAAGGAAGCAATGGAATGGTAGCATCACCAGGAAGCATTTTGAACAGTACACCACCCCTTGATGTAAATGCAAAAGCTGGCTTGCTGATGTCCCAGGCTAATCTACCTGGGGATAGTATAGATTCCAAGGAATCATTGAATTATCGCCCCAAATCATTCTCTGATGCATCTCTGCAGTCGGCATCTACCTCTTATGGCTTAACTGGGAACAAGATTGTGAGCAATGCTGGCCCCTGTGAAAGTAGTTTATTCTCGAGCTCCATGTCTGAAATATTTAGCCGAAAGTTACGGTTATTTGGAAATGATGTTCAGTCTGATAGGACTATTGCTGCTGGTTTCCCGGAGGAACCATGTAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAATTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGTATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATAATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGCTTTTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAACGTTGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTAATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCACCAGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGACTTGATTCATCTGTTTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCCGAATCTGCTCTTCGTGCTTTGAATAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCACCCTAGTTTGATGCACCAGTCACATAAGGGCCAAGATGAGCGAGATCTGGGTCAGAGTATTATGGACAGTTTACCATTAAGACCAAAGGCAACAGGGTCTTCTGGAGTAATTGGATCTGGGGTCTTGGAAAATGGATATAATCAGAGGTTTCAATCTGCAGTGCGACAACCTATTAATGCATTTATGGATAATTCATTCATTAATGTGAACAACACTAGTATTCACAACACTGTGAGAGGGGCATCTGCTGGAAAGGTGTCTGGAGTTTCTGAGTCTAATGGCTATATCGATGCAATGAAATTTGCATCTAGTTCAAGATTTCATCCTCATTCCTTACCTGAGTACCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGGCTAACAATATAGGTGCTGGAGCTGCAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACATAGCAGAATTTAACGCGGGAGGAAATGGCATACGCCCACATGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAACAACCTTCATCGAATAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCTCCAAACCTTCCACAGATGTCAAGCTTTGCTAGAACACCACCACATTTGCTGAGAACACCACATATGATGGACCACCATGTTGGATCGGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGCTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCACGTTGGTGGGAATGGCACTGAACTGACATCCACTGCAGGGCAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGCAAGGCATCCCATGTCTTCAATGTCAAAATTTGATACTACCAATGACCGAATGAGAAACCTTTATCACCGTAGAAACGAATCAAGCACCAACAATGTTGACAAGAAGCAATACGAGCTTGATCTAGCTCGTATATTGCGGGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCTAACAAGTATACTTCAAAAATGCTTCTTGCTGCAATAGATGAGCAATGTAAGGGAACTTACGATTTCCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATCCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTGGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCTCATTTCCAGAACTCAAGCCTGATGAACGAAGACAAGCGATGCCGACCTATCCTCTTCCATACTGATGGCCCAAATGCCGGTGATCCGGAACCTTTCCCCATGGGTGCTAACATCAGACTGCGGGCCGGAAAATCTCGCATCGGCGGCGGCGAGGAGAATCGAAGCCAAGGGAGTCCTTCAGCTCTGGCAAGTGGAGAAGAGTGTGGTAATGGGATAGACACTTCAAAAAACTAA 2841 0.4231 MPFQIMDRRGVSASSHFFEDVSFRSERNVGLRKPISINDPYPQGSNGMVASPGSILNSTPPLDVNAKAGLLMSQANLPGDSIDSKESLNYRPKSFSDASLQSASTSYGLTGNKIVSNAGPCESSLFSSSMSEIFSRKLRLFGNDVQSDRTIAAGFPEEPCKSLKEMEADTIGNLLPDEDDLFSGVVDELGCSSHAKTIDDFEDFDLFSSGGGMEMEGDEHLSSGKIMNGLDGDYGFFGAFKGKLPFGEQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAESALRALNKIDIAGKQIKLEPGHPSLMHQSHKGQDERDLGQSIMDSLPLRPKATGSSGVIGSGVLENGYNQRFQSAVRQPINAFMDNSFINVNNTSIHNTVRGASAGKVSGVSESNGYIDAMKFASSSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNIGAGAAEASDGRHIQGMGSTGNIAEFNAGGNGIRPHGLYHMWNSSNLQQQPSSNNVLWQKSPSFVNDACSPNLPQMSSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFHGSWQLHPLDFPSHNVFSHVGGNGTELTSTAGQNSPKQLSHVFPARHPMSSMSKFDTTNDRMRNLYHRRNESSTNNVDKKQYELDLARILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRAGKSRIGGGEENRSQGSPSALASGEECGNGIDTSKN* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3553 946 CDD RRM3_MEI2_like 779 864 IPR034454 -
Vra7g3553 946 SMART rrm1_1 253 321 IPR000504 GO:0003723
Vra7g3553 946 SMART rrm1_1 778 854 IPR000504 GO:0003723
Vra7g3553 946 SMART rrm1_1 338 406 IPR000504 GO:0003723
Vra7g3553 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 318 IPR000504 GO:0003723
Vra7g3553 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 404 IPR000504 GO:0003723
Vra7g3553 946 Pfam RNA recognition motif 2 776 872 IPR007201 -
Vra7g3553 946 Gene3D - 336 429 IPR012677 -
Vra7g3553 946 SUPERFAMILY RNA-binding domain, RBD 249 407 IPR035979 GO:0003676
Vra7g3553 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Vra7g3553 946 MobiDBLite consensus disorder prediction 910 946 - -
Vra7g3553 946 MobiDBLite consensus disorder prediction 39 54 - -
Vra7g3553 946 Gene3D - 246 335 IPR012677 -
Vra7g3553 946 CDD RRM1_MEI2_like 251 326 IPR034453 -
Vra7g3553 946 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 941 - -
Vra7g3553 946 MobiDBLite consensus disorder prediction 33 54 - -
Vra7g3553 946 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 941 - -
Vra7g3553 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
Vra7g3553 946 SUPERFAMILY RNA-binding domain, RBD 778 863 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3553 Vra-Chr7 54875546 54883410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3553 250 403 Eukaryotic Initiation Factors Gene Family AT1G71770 25.153 2.18e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3553 - - gmx:106798747 1653.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3553 7 54875546 54883410 Vra7g3553 7 54875546 54883410 ECH