Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3544 ATGGACGAGAATTTGCTCGACGATATTATCCGCCGGCTCGTTGCGGCAAAGAACGGTAGAGCCACGAAGCAGGTGCAGCTTACGGAGGCGGAGATTCGACAACTCTGCGCTTCCTCTAAAGAGATCTTTCTCAGTCAACCCAATCTTCTCGAACTCGAGGCTCCAATTAAGATTTGTGGAGATGTTCATGGCCAATACTCAGACCTTTTAAGGCTGTTTGAATACGGGGGATACCCACCAGAAGCAAATTATTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAAAGCATAGAGACAATATGCTTACTCCTTGCATACAAGGTCAAATACAAGGAGAATTTCTTTCTTCTCAGGGGTAACCATGAGTGTGCCTCCATCAACCGAATATATGGTTTCTATGATGAGTGTAAGAGGAGATTTAATGTTCGCATCTGGAAGACATTTACTGAATGCTTTAATTGTCTACCTGTTGCTGCTCTGATAGACGAGAAGATTCTTTGCATGCATGGTGGACTATCACCTGATCTTAAACATTTGGATCAGATACGGAATCTTGCTCGTCCTATCGATGTGCCAGATCACGGTCTTCTCTGTGATCTTCTATGGGCTGATCCTGATAAAGATCTTGATGGGTGGGGAGAAAATGATCGAGGTGTGTCATTTACATTTGGGGCTGATAAGGTTGTTGAATTTCTTGAACAGCATGATCTTGATCTAATTTGCAGAGCTCACCAGGTTGTAGAGGATGGATATGAGTTTTTTGCCAAGCGTCAGTTGGTGACTATATTCTCCGCCCCTAATTACTGTGGTGAATTTGATAATGCTGGTGCTATGATGAGTGTGGATGACACCTTAACATGCTCTTTTCAAATACTTAAATCTTCTGAAAAGAAAGTGAAAGGTGGATTTGGCAACAACACATCAAGACCGGGAACTCCACCTCATAAGGGTGGGAAGAATTAA 966 0.4275 MDENLLDDIIRRLVAAKNGRATKQVQLTEAEIRQLCASSKEIFLSQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRIWKTFTECFNCLPVAALIDEKILCMHGGLSPDLKHLDQIRNLARPIDVPDHGLLCDLLWADPDKDLDGWGENDRGVSFTFGADKVVEFLEQHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKSSEKKVKGGFGNNTSRPGTPPHKGGKN* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3544 321 CDD MPP_PP1_PPKL 6 294 - -
Vra7g3544 321 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Vra7g3544 321 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 3 1 319 - -
Vra7g3544 321 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Vra7g3544 321 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Vra7g3544 321 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Vra7g3544 321 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Vra7g3544 321 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Vra7g3544 321 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Vra7g3544 321 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Vra7g3544 321 SMART pp2a_7 27 297 IPR006186 GO:0016787
Vra7g3544 321 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 319 - -
Vra7g3544 321 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Vra7g3544 321 SUPERFAMILY Metallo-dependent phosphatases 22 298 IPR029052 -
Vra7g3544 321 Gene3D - 1 305 IPR029052 -
Vra7g3544 321 MobiDBLite consensus disorder prediction 300 321 - -
Vra7g3544 321 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3544 Vra-Chr7 54782906 54787076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3544 56 240 Calmodulin-binding Proteins AT5G63870 30.455 8.45e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3544 K06269 - gmx:100783178 650.203